Gene omics information

Query gene ID At3g61390
Gene name U-box domain-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3133.8At3g61390825311U-box domain-containing proteinF:unknown;P:unknown;C:unknown;OMFPBAVS.X.H.G.
0.3338.1At2g02310814762AtPP2-B6 (Phloem protein 2-B6)F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;PS.X.H.G.
0.092.8At5g38310833813unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPS.X.H.G.
0.061.4At5g60280836150lectin protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.051.1At1g61370842431S-locus lectin protein kinase family proteinF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAS.X.H.G.
0.040.9At3g01175820400-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
508.9100.0GSM244455Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
370.6100.0GSM244448Arabidopsis wild-type_6 h_ Xanthomonas inoculated_biological rep1_exp1GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
252.6100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
134.899.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
124.299.9GSM128661Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
119.199.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
112.099.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
111.499.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
98.499.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
95.899.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.297e-1685At2g45920819200U-box domain-containing proteinF:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;POMFBAVC.G.S.X.
0.066e-1065At2g45910819199protein kinase family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVAC.G.S.X.
0.022e-448At1g01680839251U-box domain-containing proteinF:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;PMOBFVC.G.S.X.
0.024e-240At2g24580816994sarcosine oxidase family proteinF:sarcosine oxidase activity;P:tetrahydrofolate metabolic process;C:cellular_component unknown;BOMFAPC.G.S.X.
0.026e-136At5g20340832156BG5 (beta-1,3-glucanase 5)Encodes a putative beta 1,3-glucanase.C.G.S.X.
0.016e-136At1g55325841978-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBPOFC.G.S.X.
0.016e-136At1g27510839642-F:unknown;P:response to singlet oxygen;C:thylakoid membrane;PMOFBC.G.S.X.
0.026e-136At1g56040842055binding / protein binding / ubiquitin-protein ligaseF:ubiquitin-protein ligase activity, protein binding, binding;P:RNA metabolic process, protein ubiquitination;C:ubiquitin ligase complex;MOBFPAVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.038e-136Glycine maxHgAffx.16028.1.S1_atCB280328--4e+0At2g16620protein kinase-relatedC.G.S.X.
0.021e+034Hordeum vulgareHM01D11T_atHM01D11T--6e-1At5g4577560S ribosomal protein L11 (RPL11D)C.G.S.X.
0.023e-138Oryza sativaOs02g07135009630.m04708-Cyclin-like F-box domain containing protein2e-1At3g61390U-box domain-containing proteinC.G.S.X.
0.035e-859Populus trichocarpaPtpAffx.210731.1.S1_atpmrna21051hypothetical protein-1e-12At3g49060protein kinase family protein / U-box domain-containing proteinC.G.S.X.
0.034e-240Triticum aestivumTaAffx.110899.1.S1_atCA652046--9e-1At1g67620-C.G.S.X.
0.034e-238Vitis vinifera1622431_atCF371864hypothetical protein LOC100264392-8e-1At3g06895unknown proteinC.G.S.X.
0.024e+032Zea maysZmAffx.500.1.A1_atAI691742--1e+1At5g05670signal recognition particle bindingC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0016567The process by which one or more ubiquitin moieties are added to a protein.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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