CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g61310

Gene name DNA-binding family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At3g61310 825303 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOB S.X. H.G.
0.67 81.6 At1g67040 843024 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF S.X. H.G.
0.57 73.8 At4g29030 829024 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA S.X. H.G.
0.57 73.8 At5g08000 830694 E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3) Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and binds callose. S.X. H.G.
0.40 50.8 At2g26330 817173 ER (ERECTA) Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
41.3 99.8 E-MEXP-728-raw-cel-1062074512
35.5 99.7 E-MEXP-682-raw-cel-922397713
35.2 99.7 GSM131671 ATGE_48_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
34.8 99.7 GSM131678 ATGE_50_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
33.9 99.7 GSM131683 ATGE_52_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
33.8 99.7 E-MEXP-728-raw-cel-1062074538
33.6 99.7 E-MEXP-728-raw-cel-1062074361
32.5 99.7 E-MEXP-728-raw-cel-1062074303
31.8 99.7 GSM131675 ATGE_49_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
31.1 99.7 E-MEXP-728-raw-cel-1062074409
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.39 8e-34 145 At2g45850 819193 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:nucleus;PMFOB C.G. S.X.
0.03 9e-3 42 At3g22070 821769 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOBPFVA C.G. S.X.
0.02 3e-2 40 At5g51590 835233 DNA-binding protein-related F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOVB C.G. S.X.
0.02 1e-1 38 At5g03940 830273 CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) mutant has Yellow first leaves; Chloroplast Signal Recognition Particle Subunit C.G. S.X.
0.02 1e-1 38 At4g35480 829700 RHA3B Encodes a putative RING-H2 finger protein RHA3b. C.G. S.X.
0.04 1e-1 38 At4g17950 827520 DNA-binding family protein F:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;OMFPBV C.G. S.X.
0.02 1e-1 38 At3g43520 823438 unknown protein F:unknown;P:biological_process unknown;C:chloroplast, chloroplast envelope;MPBOFVA C.G. S.X.
0.01 1e-1 38 At1g21630 838765 calcium-binding EF hand family protein F:calcium ion binding;P:unknown;C:cytosol, plasma membrane;BMOFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e-3 44 Glycine max GmaAffx.87594.1.S1_at AW472032 - - 2e-3 At3g61310 DNA-binding family protein C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig18837_at Contig18837 - - 3e-4 At5g60020 LAC17 (laccase 17) C.G. S.X.
0.03 2e-2 42 Oryza sativa Os05g0227600 AY224438.1 - Conserved hypothetical protein 3e-6 At2g24060 translation initiation factor 3 (IF-3) family protein C.G. S.X.
0.10 5e-5 50 Populus trichocarpa PtpAffx.61338.1.S1_at DN484218 hypothetical protein - 3e-5 At3g61310 DNA-binding family protein C.G. S.X.
0.03 6e-1 36 Triticum aestivum TaAffx.30889.1.S1_at CA621330 - - 3e-1 At1g08480 unknown protein C.G. S.X.
0.06 4e-11 67 Vitis vinifera 1608738_at BQ800272 hypothetical protein LOC100265498 - 8e-11 At3g61310 DNA-binding family protein C.G. S.X.
0.02 2e-1 36 Zea mays Zm.705.1.S1_at BG842406 - - 4e-2 At1g04445 zinc finger (C2H2 type) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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