CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g61190

Gene name BAP1 (BON ASSOCIATION PROTEIN 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g61190 825291 BAP1 (BON ASSOCIATION PROTEIN 1) Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis. S.X. H.G.
0.87 93.5 At1g80840 844423 WRKY40 Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. S.X. H.G.
0.84 91.9 At2g30040 817555 MAPKKK14 member of MEKK subfamily S.X. H.G.
0.83 91.4 At2g05050 3767735 catalytic F:catalytic activity;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.80 89.8 At4g17500 827464 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
0.80 89.8 At4g34410 829591 RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
0.70 83.5 At4g29780 829100 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MPF S.X. H.G.
0.61 76.7 At2g41640 818762 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;PMOBF S.X. H.G.
0.60 75.7 At1g28480 839748 GRX480 Encodes GRX480, a member of the glutaredoxin family that regulates protein redox state. GRX480 interacts with TGA factors and suppresses JA-responsive PDF1.2 transcription. GRX480 transcription is SA-inducible and requires NPR1. Maybe involved in SA/JA cross-talk. S.X. H.G.
0.54 69.5 At1g23710 838981 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
221.8 100.0 E-MEXP-807-raw-cel-1173273088
193.8 100.0 E-MEXP-807-raw-cel-1173273144
175.1 100.0 E-MEXP-807-raw-cel-1173273196
168.6 100.0 E-MEXP-807-raw-cel-1173273170
143.3 99.9 E-MEXP-807-raw-cel-1173273252
137.3 99.9 E-MEXP-807-raw-cel-1173273116
134.1 99.9 E-MEXP-807-raw-cel-1173273060
132.1 99.9 E-MEXP-807-raw-cel-1173273223
98.7 99.9 GSM142648 MC002_ATH1_A9.2-dubos-aah GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
77.6 99.9 GSM142647 MC002_ATH1_A9.1-dubos-aah GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.08 1e-3 44 At2g45760 819184 BAP2 (BON ASSOCIATION PROTEIN 2) encodes a protein that is similar to BONZAI1-binding protein BAP1. C.G. S.X.
0.02 1e+0 34 At5g46110 834652 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) mutant has Altered acclimation responses; Chloroplast Triose Phosphate Translocator C.G. S.X.
0.01 1e+0 34 At2g02480 814777 STI (STICHEL) STICHEL mutant shows trichomes with fewer than normal branches. C.G. S.X.
0.01 1e+0 34 At2g34680 818033 AIR9 isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular. C.G. S.X.
0.01 4e+0 32 At5g45220 834558 Toll-Interleukin-Resistance (TIR) domain-containing protein F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P C.G. S.X.
0.01 4e+0 32 At5g65500 836676 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ ubiquitin-protein ligase F:in 6 functions;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;PMOBFVA C.G. S.X.
0.01 4e+0 32 At5g59660 836087 leucine-rich repeat protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-1 38 Glycine max GmaAffx.32394.1.S1_at BI973978 - - 5e-2 At3g61190 BAP1 (BON ASSOCIATION PROTEIN 1) C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig13108_at Contig13108 - - 9e-17 At2g34160 nucleic acid binding C.G. S.X.
0.05 9e+0 32 Oryza sativa OsAffx.20997.1.S1_at - - - 0 C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.9849.1.S1_at BU893598 - - 2e-1 At1g69580 transcription factor C.G. S.X.
0.03 2e+1 30 Triticum aestivum TaAffx.81654.1.S1_at CA683463 - - 1e+1 At3g03980 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1618073_at CF414414 hypothetical protein LOC100252995 - 2e+0 At3g61190 BAP1 (BON ASSOCIATION PROTEIN 1) C.G. S.X.
0.03 8e+0 30 Zea mays ZmAffx.1403.1.S1_at 40794996-78 - - 3e+0 At3g15820 phosphatidic acid phosphatase-related / PAP2-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009611 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
X GO:0019725 Any process involved in the maintenance of an internal equilibrium at the level of the cell.
X GO:0009408 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
X GO:0009409 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
X GO:0009751 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus.
X GO:0031348 Any process that stops, prevents or reduces the frequency, rate or extent of a defense response.
X GO:0009266 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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