Gene omics information

Query gene ID At3g61150
Gene name HDG1 (HOMEODOMAIN GLABROUS 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g61150825287HDG1 (HOMEODOMAIN GLABROUS 1)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.S.X.H.G.
0.2930.3At1g51570841582C2 domain-containing proteinF:unknown;P:tryptophan biosynthetic process;C:endoplasmic reticulum, cell wall;MPOFS.X.H.G.
0.2830.3At2g45810819189DEAD/DEAH box helicase, putativeF:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;OMBFPAVS.X.H.G.
0.2726.2At2g28930817442APK1BF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVAS.X.H.G.
0.2624.4At1g27510839642-F:unknown;P:response to singlet oxygen;C:thylakoid membrane;PMOFBS.X.H.G.
0.2522.6At5g63860836506UVR8 (UVB-RESISTANCE 8)UV-B-specific signaling component that orchestrates expression of a range of genes with vital UV-protective functions. Located in the nucleus and the cytosol. Associates with chromatin via histones. UV-B light promotes URV8 protein accumulation in the nucleus.S.X.H.G.
0.2319.3At4g38520830009protein phosphatase 2C family protein / PP2C family proteinF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVS.X.H.G.
0.2217.5At2g18910816407hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBOVS.X.H.G.
0.2115.8At4g09670826553oxidoreductase family proteinF:electron carrier activity, oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOFMAPS.X.H.G.
0.2014.4At2g39290818514PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1)Encodes a phosphatidylglycerolphosphate synthase 2C which is dual-targeted into chloroplasts and mitochondria. Mutant plants have mutant chloroplasts but normal mitochondria.S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
55.399.8GSM142851MG001_ATH1_A4-Torres-2N1GSE6176Impact of Type III effectors on plant defense responses
38.599.8GSM142852MG001_ATH1_A5-Torres-2N3GSE6176Impact of Type III effectors on plant defense responses
31.899.7GSM142853MG001_ATH1_A6-Torres-2N6GSE6176Impact of Type III effectors on plant defense responses
28.099.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
27.399.7GSM142840MG001_ATH1_A1-Torres-1N1GSE6176Impact of Type III effectors on plant defense responses
25.899.7E-MEXP-1094-raw-cel-1379507193
22.899.6GSM142850MG001_ATH1_A3-Torres-1N6GSE6176Impact of Type III effectors on plant defense responses
21.999.6E-MEXP-1094-raw-cel-1379507233
21.599.6E-MEXP-1094-raw-cel-1379507433
20.599.6E-MEXP-1094-raw-cel-1379507473
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.234e-25117At4g00730828022ANL2 (ANTHOCYANINLESS 2)Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root developmentC.G.S.X.
0.032e-861At1g73360843671HDG11 (HOMEODOMAIN GLABROUS 11)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. It is involved in trichome branching.C.G.S.X.
0.032e-552At5g52170835293HDG7 (HOMEODOMAIN GLABROUS 7)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.C.G.S.X.
0.032e-242At4g21750828263ATML1 (MERISTEM LAYER 1)Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development.C.G.S.X.
0.028e-240At5g46880834733HB-7 (HOMEOBOX-7)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MPFOBC.G.S.X.
0.018e-240At1g51270841550structural molecule/ transmembrane receptorF:transmembrane receptor activity, structural molecule activity;P:signal transduction, innate immune response;C:intrinsic to membrane;PMFOC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.067e-344Glycine maxGma.9275.1.S1_atCA819443--9e-10At4g00730ANL2 (ANTHOCYANINLESS 2)C.G.S.X.
0.031e-138Hordeum vulgareContig19879_atContig19879--5e+0At4g00730ANL2 (ANTHOCYANINLESS 2)C.G.S.X.
0.097e-1377Oryza sativaOs09g0526200AK071877.1-OCL3 protein2e-2At1g76180ERD14 (EARLY RESPONSE TO DEHYDRATION 14)C.G.S.X.
0.163e-20101Populus trichocarpaPtpAffx.202196.1.S1_s_atpmrna4391hypothetical protein-5e-40At4g00730ANL2 (ANTHOCYANINLESS 2)C.G.S.X.
0.015e+034Triticum aestivumTaAffx.28071.1.S1_atCA665678--2e-1At3g12190-C.G.S.X.
0.054e-1065Vitis vinifera1614235_atCF512911--5e-10At3g61150HDG1 (HOMEODOMAIN GLABROUS 1)C.G.S.X.
0.032e-963Zea maysZm.688.1.A1_atAJ250985.1outer cell layer3-8e-9At4g00730ANL2 (ANTHOCYANINLESS 2)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
LGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage