CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g61130

Gene name GAUT1 (GALACTURONOSYLTRANSFERASE 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g61130 825285 GAUT1 (GALACTURONOSYLTRANSFERASE 1) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
0.48 62.5 At1g08200 837341 AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2) Encodes a putative UDP-D-apiose/UPD-D-xylose synthetase. S.X. H.G.
0.47 61.2 At4g18030 827528 dehydration-responsive family protein F:unknown;P:biological_process unknown;C:Golgi apparatus, plasma membrane, plant-type cell wall;PBO S.X. H.G.
0.46 59.8 At5g11710 831043 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related EPSIN1 plays an important role in the vacuolar trafficking of soluble proteins at the trans-Golgi network via its interaction with gamma-ADR, VTI11, VSR1, and clathrin. Associated with actin filaments and with the Golgi complex. Expressed in most tissues. S.X. H.G.
0.39 48.4 At1g67930 843121 Golgi transport complex protein-related F:unknown;P:unknown;C:chloroplast;OMFBPV S.X. H.G.
0.38 46.7 At4g38040 829960 exostosin family protein F:catalytic activity;P:biological_process unknown;C:chloroplast, membrane;PMOBFV S.X. H.G.
0.38 46.7 At5g08530 830752 CI51 (51 kDa subunit of complex I) F:4 iron, 4 sulfur cluster binding, NAD or NADH binding, FMN binding, NADH dehydrogenase (ubiquinone) activity, oxidoreductase activity, acting on NADH or NADPH;P:mitochondrial electron transport, NADH to ubiquinone;C:mitochondrion, respiratory chain complex I;OBMFPA S.X. H.G.
0.35 41.6 At4g18060 827531 clathrin binding F:clathrin binding;P:unknown;C:unknown;MOFPB S.X. H.G.
0.29 30.3 At1g26850 839229 dehydration-responsive family protein F:unknown;P:unknown;C:Golgi apparatus, membrane;PBO S.X. H.G.
0.28 30.3 At1g25490 839135 RCN1 (ROOTS CURL IN NPA) One of three genes encoding phosphoprotein phosphatase 2A regulatory subunit A; Recessive ethylene-response mutant EER1 displays increased ethylene sensitivity in the hypocotyl and stem S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.4 99.5 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
15.2 99.4 GSM133961 Fukuda_1-6_4B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
13.6 99.4 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
13.3 99.4 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
12.3 99.3 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.8 99.3 GSM133960 Fukuda_1-5_4A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.3 99.3 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.2 99.2 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
10.1 99.2 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.0 99.1 E-TABM-61-raw-cel-683343592
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.11 1e-15 85 At2g46480 819257 GAUT2 Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.08 5e-15 83 At4g38270 829984 GAUT3 (Galacturonosyltransferase 3) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.03 4e-3 44 At5g54690 835558 GAUT12 (GALACTURONOSYLTRANSFERASE 12) Encodes a protein with putative galacturonosyltransferase activity. Mutants defective in this gene displayed a notable reduction in xylose (>50%) in the cell walls from stems and roots and a reduction in cellulose (~25%). C.G. S.X.
0.01 6e-2 40 At2g38650 818447 GAUT7 (GALACTURONOSYLTRANSFERASE 7) F:polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:Golgi apparatus;PBMFOV C.G. S.X.
0.01 6e-2 40 At2g31830 817740 endonuclease/exonuclease/phosphatase family protein F:inositol or phosphatidylinositol phosphatase activity;P:unknown;C:unknown;MFPOB C.G. S.X.
0.01 3e-1 38 At3g15170 820748 CUC1 (CUP-SHAPED COTYLEDON1) Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). Cuc mutant was first recognized at the heart stage, where embryos lacking two distinct bulges of cotyledonary primordia were observed. C.G. S.X.
0.03 3e-1 38 At3g25140 822105 QUA1 (QUASIMODO 1) Quasimodo1, encodes a glycosyltransferase, involved in homogalacturonan biosynthesis; mutant shows cell adhesion defect and lower wall uronic acid content. C.G. S.X.
0.04 1e+0 36 At5g47780 834829 GAUT4 (Galacturonosyltransferase 4) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 1e-31 139 Glycine max GmaAffx.79679.1.S1_at BG155341 - - 3e-32 At3g61130 GAUT1 (GALACTURONOSYLTRANSFERASE 1) C.G. S.X.
0.32 2e-34 147 Hordeum vulgare Contig7832_at Contig7832 - - 5e-34 At3g61130 GAUT1 (GALACTURONOSYLTRANSFERASE 1) C.G. S.X.
0.28 3e-24 115 Oryza sativa Os06g0712500 AK068531.1 - Glycosyl transferase, family 8 protein 2e-24 At3g61130 GAUT1 (GALACTURONOSYLTRANSFERASE 1) C.G. S.X.
0.12 5e-25 117 Populus trichocarpa Ptp.7877.1.A1_at CV261347 glycosyltransferase - 1e-25 At3g61130 GAUT1 (GALACTURONOSYLTRANSFERASE 1) C.G. S.X.
0.12 5e-12 73 Triticum aestivum Ta.3672.1.S1_s_at BJ292063 - - 1e-12 At3g61130 GAUT1 (GALACTURONOSYLTRANSFERASE 1) C.G. S.X.
0.10 6e-24 111 Vitis vinifera 1608107_at CB977040 similar to GAUT1/LGT1 (Galacturonosyltransferase 1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups - 1e-23 At3g61130 GAUT1 (GALACTURONOSYLTRANSFERASE 1) C.G. S.X.
0.26 6e-31 135 Zea mays Zm.13469.1.S1_at AY109041.1 hypothetical protein LOC100191781 - 2e-30 At3g61130 GAUT1 (GALACTURONOSYLTRANSFERASE 1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010289 The chemical reactions and pathways resulting in the formation of the pectidic homogalacturonan, characterized by a backbone of 1,4-linked alpha-D-GalpA residues that can be methyl-esterified at C-6 and carry acetyl groups on O-2 and O-3.
C GO:0016051 The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00359 Glucosyltransferase
00437 Xyloglucan biosynthesis and modification

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage