Gene omics information

Query gene ID At3g60540
Gene name sec61beta family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2014.4At3g60540825225sec61beta family proteinF:protein transporter activity;P:protein transport;C:unknown;MFPOS.X.H.G.
0.4050.8At3g07390819927AIR12isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.S.X.H.G.
0.2930.3At2g26440817184pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMS.X.H.G.
0.2930.3At2g37710818348RLK (receptor lectin kinase)Induced in response to Salicylic acid.S.X.H.G.
0.2522.6At4g03450827913ankyrin repeat family proteinF:protein binding;P:unknown;C:unknown;MOPFBVAS.X.H.G.
0.2014.4At3g51660824329macrophage migration inhibitory factor family protein / MIF family proteinF:molecular_function unknown;P:inflammatory response, response to other organism;C:peroxisome;MPOBS.X.H.G.
0.135.8At5g52810835358ornithine cyclodeaminase/mu-crystallin family proteinF:structural constituent of eye lens, binding, catalytic activity;P:arginine catabolic process to glutamate, nopaline catabolic process, metabolic process, octopine catabolic process;C:chloroplast;BOMAFPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
59.599.8GSM142739DH001_ATH1_A6-TCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
57.299.8GSM131140AtGen_B-26_2-5-4_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
44.199.8GSM131106Broadley_1-4_A4-Bo-P3-phosphate-starved_Rep3_ATH1GSE5614Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
42.999.8GSM131105Broadley_1-3_A3-Bo-P2-phosphate-starved_Rep2_ATH1GSE5614Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
42.899.8GSM131141AtGen_B-27_2-6-4_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
42.899.8GSM142738DH001_ATH1_A5-BCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
40.999.8GSM131139AtGen_B-25_2-4-4_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
40.399.8GSM142852MG001_ATH1_A5-Torres-2N3GSE6176Impact of Type III effectors on plant defense responses
40.099.8GSM131126AtGen_B-12_1-5-4_REP1_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
39.799.8GSM142835MG001_ATH1_A13-Torres-4N1GSE6176Impact of Type III effectors on plant defense responses
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.752e-37155At2g45070819114SEC61 BETASec61 Beta SubunitC.G.S.X.
0.037e-340At4g27440828853PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B)light-dependent NADPH:protochlorophyllide oxidoreductase BC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.322e-1685Glycine maxGma.4320.1.S1_s_atCD390831--3e-17At2g45070SEC61 BETAC.G.S.X.
0.301e-961Hordeum vulgareContig4691_atContig4691--2e-14At2g45070SEC61 BETAC.G.S.X.
0.191e-344Oryza sativaOs12g01733009640.m00678-TCP transcription factor family protein1e-8At2g45070SEC61 BETAC.G.S.X.
0.335e-23107Populus trichocarpaPtpAffx.19271.1.S1_s_atCV252580hypothetical protein-3e-16At2g45070SEC61 BETAC.G.S.X.
0.238e-959Triticum aestivumTa.21327.1.S1_atCA597040--5e-12At2g45070SEC61 BETAC.G.S.X.
0.381e-23107Vitis vinifera1609432_atCB916730similar to sec61beta family protein-8e-23At3g60540sec61beta family proteinC.G.S.X.
0.065e-236Zea maysZm.5314.2.A1_atAW179427--6e-4At4g0081060S acidic ribosomal protein P1 (RPP1B)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0015031The directed movement of proteins into, out of, within or between cells.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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