Gene omics information

Query gene ID At3g60520
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g60520825223unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.5368.6At1g31940840084unknown proteinF:unknown;P:unknown;C:plasma membrane;PS.X.H.G.
0.4659.8At1g69640843300SBH1 (SPHINGOID BASE HYDROXYLASE 1)Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth.S.X.H.G.
0.4659.8At3g57090824876BIGYINEncodes a protein with similarity to yeast FIS proteins. These membrane anchored proteins bind DRP proteins and function during organelle division. FIS1B is expressed ubiquitously and appears to be involved in peroxisome division.S.X.H.G.
0.4659.8At4g22260828321IM (IMMUTANS)Similar to mitochondrial alternative oxidase. im mutants have a variegated phenotype and fail to differentiate chloroplasts in the majority of their cells under high light intensity continuous illumination. The white tissues of immutans accumulate phytoene, a non-colored C40 carotenoid intermediate. This suggests that immutans controls, either directly or indirectly, the activity of phytoene desaturase (PDS), the enzyme that converts phytoene to zeta-carotene in higher plants. However, im is not the structural gene for PDS. It is located in the lumenar face of the thylakoid membrane. IM is expressed ubiquitously in plant tissues.S.X.H.G.
0.4152.4At4g37470829902hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:catechol catabolic process, ortho-cleavage, protocatechuate catabolic process, ortho-cleavage;C:cellular_component unknown;BOPMFAVS.X.H.G.
0.4050.8At3g63420825517AGG1 (Arabidopsis Ggamma-subunit 1)heterotrimeric G protein gamma-subunit (AGG1) mRNA,S.X.H.G.
0.4050.8At5g07910830685leucine-rich repeat family proteinF:protein binding;P:N-terminal protein myristoylation;C:plasma membrane;MPBOFAS.X.H.G.
0.3948.4At5g53330835414-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFS.X.H.G.
0.3846.7At5g04830830362unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMBOS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
28.299.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
23.499.6GSM157312Hammond_3-2_Potassium-starved-shoot_Rep1_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plants
19.599.6GSM311283Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
19.499.6GSM157321Hammond_3-14_Potassium-starved-shoot_Rep3_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plants
18.199.5GSM10441WT Ovule 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.213e-961At1g02070839270unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PC.G.S.X.
0.041e-240At2g17870816297cold-shock DNA-binding family proteinF:DNA binding, zinc ion binding, nucleic acid binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BMOVPFAC.G.S.X.
0.032e-136At2g34540818017unknown proteinF:unknown;P:biological_process unknown;C:unknown;PC.G.S.X.
0.057e-134At4g33100829447-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOC.G.S.X.
0.027e-134At3g18190821346chaperonin, putativeF:unfolded protein binding, protein binding, ATP binding;P:response to cadmium ion;C:unknown;BOMFPAVC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.097e-548Glycine maxGma.16406.1.S1_atCD408878--3e-11At1g02070unknown proteinC.G.S.X.
0.031e+032Hordeum vulgareContig8546_s_atContig8546--1e+0At3g51960bZIP family transcription factorC.G.S.X.
0.062e+034Oryza sativaOs04g0551600AK064637.1-FYVE/PHD zinc finger domain containing protein2e-5At1g02070unknown proteinC.G.S.X.
0.082e-550Populus trichocarpaPtpAffx.147493.2.A1_atCV243231hypothetical protein-3e-8At1g02070unknown proteinC.G.S.X.
0.058e-134Triticum aestivumTa.22792.2.S1_x_atCA679824--5e-1At3g60520unknown proteinC.G.S.X.
0.053e+030Vitis vinifera1621435_s_atCF515294hypothetical protein LOC100253802-2e+0At2g18040PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1)C.G.S.X.
0.041e+032Zea maysZm.17729.1.S1_atCK370390hypothetical protein LOC100274022-4e+0At3g60520unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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