CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g60470

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.29 30.3 At3g60470 825218 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.35 41.6 At5g52710 835348 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMFBPVA S.X. H.G.
0.33 38.1 At3g12230 820403 scpl14 (serine carboxypeptidase-like 14) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB S.X. H.G.
0.33 38.1 At5g05900 830475 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF S.X. H.G.
0.33 38.1 At5g11920 831065 AtcwINV6 (6-&1-fructan exohydrolase) Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
226.7 100.0 GSM184490 Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
198.4 100.0 GSM184485 Epidermis&Cortex root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
170.8 100.0 GSM184489 Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
144.7 99.9 GSM184487 Epidermis&Cortex root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
96.1 99.9 GSM184488 Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
95.1 99.9 GSM184479 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
88.8 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
78.1 99.9 GSM184486 Epidermis&Cortex root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
74.9 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
74.1 99.9 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 8e-4 46 At1g67150 843035 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.06 1e-2 42 At2g28580 817406 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.05 5e-2 40 At2g44930 819102 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 8e-1 36 At4g39950 830154 CYP79B2 Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. C.G. S.X.
0.01 3e+0 34 At5g60280 836150 lectin protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 3e+0 34 At4g16790 827385 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:unknown;MPFOBVA C.G. S.X.
0.01 3e+0 34 At4g28220 828937 NDB1 (NAD(P)H dehydrogenase B1) F:disulfide oxidoreductase activity, NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane;BOFPAM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max GmaAffx.90559.1.S1_x_at CF806284 - - 2e-23 At3g48890 ATMP2 C.G. S.X.
0.02 1e-1 38 Hordeum vulgare Contig15241_at Contig15241 - - 6e+0 At3g44280 unknown protein C.G. S.X.
0.02 3e-2 42 Oryza sativa Os08g0428500 9636.m03322 - - 2e-1 At3g12685 - C.G. S.X.
0.04 1e+0 36 Populus trichocarpa PtpAffx.203502.1.S1_at pmrna6967 hypothetical protein - 3e-1 At3g60470 unknown protein C.G. S.X.
0.02 3e+0 34 Triticum aestivum Ta.18957.2.S1_at CA653867 - - 3e-4 At2g27390 proline-rich family protein C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1618450_at CA809366 - - 3e-9 At4g14965 AtMAPR4 (Arabidopsis thaliana membrane-associated progesterone binding protein 4) C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.278.1.A1_at AI670406 - - 8e-1 At1g73875 endonuclease/exonuclease/phosphatase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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