Gene omics information

Query gene ID At3g60420
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7385.5At3g60420825213-F:unknown;P:unknown;C:cellular_component unknown;OBFPMS.X.H.G.
0.5773.8At2g04450814985ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6)F:ADP-ribose diphosphatase activity, hydrolase activity, NAD or NADH binding;P:response to other organism;C:cytosol;OBMPAFVS.X.H.G.
0.4050.8At3g52430824408PAD4 (PHYTOALEXIN DEFICIENT 4)Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, another disease resistance signaling protein. Expressed at elevated level in response to green peach aphid (GPA) feeding, and modulates the GPA feeding-induced leaf senescence through a mechanism that doesn't require camalexin synthesis and salicylic acid (SA) signaling.S.X.H.G.
0.2522.6At1g73805843716calmodulin bindingF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.1912.7At5g24210832488lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;POS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
96.399.9GSM128660Underwood_1-13_Cor-5x10e7-10h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
76.299.9GSM128676Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
75.499.9GSM128677Underwood_1-30_DC3000-10e8-7h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
71.199.9GSM128661Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
66.799.8GSM142844MG001_ATH1_A25-Torres-8N1GSE6176Impact of Type III effectors on plant defense responses
65.199.8E-MEXP-807-raw-cel-1173272921
64.599.8E-ATMX-25-raw-cel-1441077482
59.499.8E-ATMX-25-raw-cel-1441077500
51.399.8E-ATMX-25-raw-cel-1441077517
50.099.8GSM142846MG001_ATH1_A27-Torres-9N1GSE6176Impact of Type III effectors on plant defense responses
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.493e-42173At3g60450825216-F:unknown;P:biological_process unknown;C:cellular_component unknown;BOFPMC.G.S.X.
0.405e-1995At3g60440825215-F:unknown;P:unknown;C:chloroplast;OFBPMC.G.S.X.
0.021e-138At3g20810821629transcription factor jumonji (jmjC) domain-containing proteinF:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;MBOFPVC.G.S.X.
0.021e-138At1g28690839769pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAC.G.S.X.
0.012e+034At1g15460838116BOR4 (REQUIRES HIGH BORON 4)Encodes a efflux-type boron transporter. Over-expression improved plant growth under B toxic conditions.C.G.S.X.
0.016e+032At5g28460832933pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.046e-136Glycine maxGmaAffx.22113.1.S1_atAW458649--2e-1At3g60420-C.G.S.X.
0.033e+032Hordeum vulgareContig1205_s_atContig1205--3e-10At5g56030HSP81-2 (HEAT SHOCK PROTEIN 81-2)C.G.S.X.
0.023e+034Oryza sativaOsAffx.15200.4.A1_at---0C.G.S.X.
0.069e-342Populus trichocarpaPtpAffx.87304.1.S1_atCA926327--1e-3At3g60440-C.G.S.X.
0.037e+032Triticum aestivumTaAffx.56693.1.S1_atCA646506--6e-1At1g53070legume lectin family proteinC.G.S.X.
0.032e+032Vitis vinifera1622105_x_atCF203247.1--6e-1At5g38300unknown proteinC.G.S.X.
0.023e+032Zea maysZm.16085.1.A1_atCO523743hypothetical protein LOC100216919-2e+0At4g32295unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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