CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g60340

Gene name palmitoyl protein thioesterase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.42 53.9 At3g60340 825205 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:vacuole;MPFO S.X. H.G.
0.56 73.0 At3g55770 824743 LIM domain-containing protein F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPF S.X. H.G.
0.44 57.2 At1g16240 838193 SYP51 (SYNTAXIN OF PLANTS 51) Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed. S.X. H.G.
0.44 57.2 At1g36980 840608 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
0.39 48.4 At2g43430 818944 GLX2-1 (GLYOXALASE 2-1) glyoxalase II mitochondrial isozyme (Glx2-1) mRNA, nuclear S.X. H.G.
0.34 39.8 At1g06060 837115 RanBPM-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO S.X. H.G.
0.33 38.1 At1g52740 841707 HTA9 (HISTONE H2A PROTEIN 9) Encodes HTA9, a histone H2A protein. S.X. H.G.
0.33 38.1 At3g11530 820326 vacuolar protein sorting 55 family protein / VPS55 family protein F:transporter activity;P:transport;C:vacuole;FMPO S.X. H.G.
0.30 32.1 At2g20120 816531 COV1 (CONTINUOUS VASCULAR RING) Encodes an integral membrane protein of unknown function, highly conserved between plants and bacteria; is likely to be involved in a mechanism that negatively regulates the differentiation of vascular tissue in the stem. Mutants display a dramatic increase in vascular tissue development in the stem in place of the interfascicular region that normally separates the vascular bundles. S.X. H.G.
0.28 30.3 At3g62290 825402 ATARFA1E (ADP-ribosylation factor A1E) A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.7 99.5 GSM133758 Lindsey_1-11_heart-stage-root_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
16.2 99.5 GSM253165 48h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
15.2 99.4 GSM242960 Steroid day 3 (day3D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
14.9 99.4 GSM242956 Steroid day 1 (day1D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
13.6 99.4 GSM242957 Mock day 3 (day3E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
13.3 99.4 GSM47019 Ler 9 GSE2473 Small RNA biogenesis mutants
13.3 99.4 GSM253166 48h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
11.1 99.2 GSM242958 Mock day 3 (day3E2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
10.9 99.2 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
10.8 99.2 GSM242959 Steroid day 3 (day3D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.11 9e-9 61 At4g17470 827458 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO C.G. S.X.
0.08 5e-4 46 At5g47340 834781 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO C.G. S.X.
0.02 8e-3 42 At4g37210 829875 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVA C.G. S.X.
0.02 3e-2 40 At2g43950 819000 OEP37 Constitutes a peptide sensitive ion channel in chloroplast outer membranes. Accumulates in germinating seeds and developing embryos. C.G. S.X.
0.12 1e-1 38 At5g47330 834780 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:response to salt stress;C:endomembrane system;MPFO C.G. S.X.
0.01 1e-1 38 At1g76720 844006 GTP binding / GTPase/ translation initiation factor F:GTP binding, GTPase activity, translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.02 5e-1 36 At5g65530 836679 protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 7e-4 46 Glycine max Gma.4059.1.S1_at AI960118 - - 8e-4 At3g60340 palmitoyl protein thioesterase family protein C.G. S.X.
0.09 4e-6 52 Hordeum vulgare Contig5918_at Contig5918 - - 9e-6 At3g60340 palmitoyl protein thioesterase family protein C.G. S.X.
0.09 2e-2 42 Oryza sativa Os10g0563000 AK072479.1 - Palmitoyl protein thioesterase family protein 1e-2 At3g60340 palmitoyl protein thioesterase family protein C.G. S.X.
0.22 1e-11 71 Populus trichocarpa Ptp.8091.1.S1_at BU810556 hypothetical protein - 1e-11 At3g60340 palmitoyl protein thioesterase family protein C.G. S.X.
0.05 2e-3 44 Triticum aestivum Ta.7386.1.A1_at BJ313497 - - 1e-3 At3g60340 palmitoyl protein thioesterase family protein C.G. S.X.
0.15 7e-16 83 Vitis vinifera 1608654_at CF206468.1 - - 2e-15 At3g60340 palmitoyl protein thioesterase family protein C.G. S.X.
0.07 4e-3 42 Zea mays Zm.4347.1.A1_at CD434952 - - 1e-2 At3g60340 palmitoyl protein thioesterase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006464 The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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