CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g60330

Gene name AHA7 (Arabidopsis H(+)-ATPase 7)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.98 97.8 At3g60330 825204 AHA7 (Arabidopsis H(+)-ATPase 7) F:hydrogen-exporting ATPase activity, phosphorylative mechanism;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane;BMOFPAV S.X. H.G.
0.64 78.9 At4g00110 828145 GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3) Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase. S.X. H.G.
0.62 77.3 At5g16480 831509 tyrosine specific protein phosphatase family protein F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FOPBM S.X. H.G.
0.61 76.7 At2g40620 818657 bZIP transcription factor family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFB S.X. H.G.
0.60 75.7 At5g65160 836639 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;MOBFPA S.X. H.G.
0.57 73.8 At3g29180 822569 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;PO S.X. H.G.
0.56 73.0 At1g79640 844303 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA S.X. H.G.
0.56 73.0 At3g12620 820442 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBV S.X. H.G.
0.55 70.6 At5g57830 835893 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBA S.X. H.G.
0.55 70.6 At1g64630 842771 WNK10 (WITH NO LYSINE KINASE 10) F:transcription factor activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
176.1 100.0 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
154.2 99.9 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
150.5 99.9 GSM265432 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
110.3 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
101.1 99.9 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
92.9 99.9 GSM265425 Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
91.1 99.9 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
80.9 99.9 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
61.8 99.8 E-MEXP-1138-raw-cel-1432773162
55.6 99.8 E-MEXP-1138-raw-cel-1432772554
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.28 2e-55 218 At5g62670 836388 AHA11 (Arabidopsis H(+)-ATPase 11) F:ATPase activity;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane, membrane;BMOFPAV C.G. S.X.
0.31 2e-52 208 At3g47950 823950 AHA4 mutant has Slight reduction in root and shoot growth; Exaggerated defects in salt stress; Plasma Membrane H+ ATPase C.G. S.X.
0.28 2e-49 198 At2g18960 816413 AHA1 (ARABIDOPSIS H+ ATPASE 1) Encodes a plasma membrane proton ATPase. Mutants have a reduced ability to close their stomata in response to drought and are affected in stomatal but not seed responsiveness to ABA. C.G. S.X.
0.32 1e-40 169 At4g30190 829142 AHA2 belongs to the P-type ATPase superfamily of cation-transporting ATPases, pumps protons out of the cell, generating a proton gradient that drives the active transport of nutrients by proton symport. has two autoinhibitory regions within the C-terminal dom C.G. S.X.
0.30 4e-38 161 At5g57350 835841 AHA3 member of Plasma membrane H+-ATPase family C.G. S.X.
0.29 9e-33 143 At1g80660 844405 AHA9 F:hydrogen-exporting ATPase activity, phosphorylative mechanism;P:proton transport;C:plasma membrane;BMOFPAV C.G. S.X.
0.28 3e-29 131 At3g42640 823281 AHA8 (Arabidopsis H(+)-ATPase 8) F:ATPase activity;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane, membrane;BMOFPAV C.G. S.X.
0.25 5e-22 107 At2g24520 816988 AHA5 (Arabidopsis H(+)-ATPase 5) F:ATPase activity;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane;BMOFPAV C.G. S.X.
0.22 3e-17 91 At2g07560 815329 AHA6 (Arabidopsis H(+)-ATPase 6) F:ATPase activity;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane, membrane;BMOFPAV C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 6e-50 200 Glycine max GmaAffx.10056.1.S1_at BM893172 - - 3e-71 At5g62670 AHA11 (Arabidopsis H(+)-ATPase 11) C.G. S.X.
0.28 2e-13 77 Hordeum vulgare Contig680_at Contig680 - - 1e-99 At4g30190 AHA2 C.G. S.X.
0.33 1e-48 196 Oryza sativa Os07g0191200 D31843.1 - Plasma membrane H+ ATPase (EC 3.6.3.6) 7e-83 At5g62670 AHA11 (Arabidopsis H(+)-ATPase 11) C.G. S.X.
0.61 1e-146 521 Populus trichocarpa PtpAffx.221106.1.S1_at pmrna37703 autoinhibited H+ ATPase - 9e-147 At3g60330 AHA7 (Arabidopsis H(+)-ATPase 7) C.G. S.X.
0.24 5e-19 97 Triticum aestivum Ta.28364.1.S1_at AY543630.1 plasma membrane H+-ATPase - 1e-97 At4g30190 AHA2 C.G. S.X.
0.18 3e-20 99 Vitis vinifera 1621002_at CF208524 hypothetical protein LOC100254244 - 6e-101 At2g24520 AHA5 (Arabidopsis H(+)-ATPase 5) C.G. S.X.
0.20 8e-25 115 Zea mays Zm.13934.1.S1_at U08984.1 membrane H(+)-ATPase1 - 7e-53 At5g62670 AHA11 (Arabidopsis H(+)-ATPase 11) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006754 The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
L GO:0006812 The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00190 Oxidative phosphorylation
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage