CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g60130

Gene name BGLU16 (BETA GLUCOSIDASE 16)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g60130 825183 BGLU16 (BETA GLUCOSIDASE 16) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:unknown;BOPMFA S.X. H.G.
0.45 58.3 At5g19860 832107 unknown protein F:unknown;P:biological_process unknown;C:vacuole;PO S.X. H.G.
0.36 43.6 At3g11780 820352 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:vacuole;FPO S.X. H.G.
0.34 39.8 At3g47670 823921 enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.33 38.1 At3g27390 822360 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P S.X. H.G.
0.29 30.3 At1g17080 838278 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.28 30.3 At1g17340 838305 phosphoinositide phosphatase family protein F:phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity;P:unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.25 22.6 At2g15570 816050 thioredoxin M-type 3, chloroplast (TRX-M3) chloroplast protein similar to prokaryotic thioredoxin. S.X. H.G.
0.24 20.7 At5g39590 833955 - F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;MOPF S.X. H.G.
0.21 15.8 At1g79590 844297 SYP52 (SYNTAXIN OF PLANTS 52) Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
47.0 99.8 GSM142846 MG001_ATH1_A27-Torres-9N1 GSE6176 Impact of Type III effectors on plant defense responses
39.7 99.8 GSM142845 MG001_ATH1_A26-Torres-8N3 GSE6176 Impact of Type III effectors on plant defense responses
33.7 99.7 GSM133029 BC482-1 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
33.7 99.7 GSM142831 GM001_ATH1_A30-Torres-9N6_repeat1 GSE6176 Impact of Type III effectors on plant defense responses
28.7 99.7 GSM142848 MG001_ATH1_A29-Torres-9N3 GSE6176 Impact of Type III effectors on plant defense responses
25.1 99.6 GSM205185 protoplast_KIN10_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
23.1 99.6 GSM205159 protoplast_KIN10_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
21.9 99.6 GSM142844 MG001_ATH1_A25-Torres-8N1 GSE6176 Impact of Type III effectors on plant defense responses
21.6 99.6 E-MEXP-546-raw-cel-863289532
20.8 99.6 GSM131199 AtGen_D-33_3-DL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.51 5e-82 305 At2g44450 819052 BGLU15 (BETA GLUCOSIDASE 15) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFA C.G. S.X.
0.36 1e-58 228 At5g42260 834231 BGLU12 (BETA GLUCOSIDASE 12) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA C.G. S.X.
0.27 1e-58 228 At2g25630 817104 BGLU14 (BETA GLUCOSIDASE 14) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:plant-type cell wall;BOPMFA C.G. S.X.
0.44 1e-55 218 At5g44640 834493 BGLU13 (BETA GLUCOSIDASE 13) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA C.G. S.X.
0.04 2e-7 57 At4g22100 828299 BGLU3 (BETA GLUCOSIDASE 2) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA C.G. S.X.
0.02 3e-6 54 At3g62750 825450 BGLU8 (BETA GLUCOSIDASE 8) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:vacuole;BOPMFA C.G. S.X.
0.02 3e-6 54 At1g26560 839196 BGLU40 (BETA GLUCOSIDASE 40) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:apoplast, chloroplast;BOPMFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 36 Glycine max GmaAffx.62677.1.S1_at BE346958 - - 6e-2 At1g51470 BGLU35 (BETA GLUCOSIDASE 35) C.G. S.X.
0.02 2e-2 40 Hordeum vulgare Contig2347_at Contig2347 - - 3e-4 At3g18070 BGLU43 (BETA GLUCOSIDASE 43) C.G. S.X.
0.04 2e+0 36 Oryza sativa Os04g0474800 AK100820.1 - Glycoside hydrolase, family 1 protein 3e-3 At5g42260 BGLU12 (BETA GLUCOSIDASE 12) C.G. S.X.
0.07 5e-9 63 Populus trichocarpa PtpAffx.216622.1.S1_at pmrna31532 hypothetical protein - 6e-10 At3g60130 BGLU16 (BETA GLUCOSIDASE 16) C.G. S.X.
0.03 3e+0 34 Triticum aestivum TaAffx.112237.1.S1_at CA625704 - - 2e-3 At5g36890 BGLU42 (BETA GLUCOSIDASE 42) C.G. S.X.
0.06 6e-2 38 Vitis vinifera 1620633_at CF206362.1 - - 6e-6 At5g42260 BGLU12 (BETA GLUCOSIDASE 12) C.G. S.X.
0.03 5e-3 42 Zea mays Zm.10740.1.S1_a_at CO520864 non-cyanogenic beta-glucosidase - 1e-2 At3g60130 BGLU16 (BETA GLUCOSIDASE 16) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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