CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g60120

Gene name BGLU27 (BETA GLUCOSIDASE 27)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.43 55.3 At3g60120 825182 BGLU27 (BETA GLUCOSIDASE 27) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFA S.X. H.G.
0.80 89.8 At3g63060 825481 EDL3 (EID1-like 3) F:unknown;P:unknown;C:unknown;P S.X. H.G.
0.61 76.7 At1g32970 840191 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOAFM S.X. H.G.
0.61 76.7 At4g37710 829927 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.40 50.8 At5g52400 835316 CYP715A1 member of CYP715A S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
629.8 100.0 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
457.7 100.0 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
148.9 99.9 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
148.6 99.9 GSM131329 AtGen_6-3621_Saltstress-Roots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
143.3 99.9 GSM131317 AtGen_6-3321_Saltstress-Roots-3.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
134.9 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
128.0 99.9 E-MEXP-546-raw-cel-863289424
127.8 99.9 E-MEXP-711-raw-cel-1563002768
111.8 99.9 GSM131325 AtGen_6-3521_Saltstress-Roots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
107.1 99.9 GSM133810 Diamond_A-3-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 1e-8 61 At3g03640 821201 BGLU25 (BETA GLUCOSIDASE 25) Encodes beta-glucosidase (GLUC). C.G. S.X.
0.02 5e-8 59 At2g44480 819055 BGLU17 (BETA GLUCOSIDASE 17) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA C.G. S.X.
0.07 5e-8 59 At1g75940 843927 ATA27 encodes a protein similar to the BGL4 beta-glucosidase from Brassica napus. The ATA27 protein is predicted to have an ER retention signal and an acidic isoelectric point, suggesting that it may be localized to the ER lumen. C.G. S.X.
0.04 3e-6 54 At5g54570 835545 BGLU41 (BETA GLUCOSIDASE 41) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:plant-type cell wall;BOPMFA C.G. S.X.
0.08 3e-6 54 At2g44490 819056 PEN2 (PENETRATION 2) Encodes a glycosyl hydrolase that localizes to peroxisomes and acts as a component of an inducible preinvasion resistance mechanism. Required for mlo resistance. C.G. S.X.
0.02 5e-5 50 At1g60090 842304 BGLU4 (BETA GLUCOSIDASE 4) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA C.G. S.X.
0.04 8e-4 46 At3g60140 825184 DIN2 (DARK INDUCIBLE 2) Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. C.G. S.X.
0.02 3e-3 44 At3g21370 821691 BGLU19 (BETA GLUCOSIDASE 19) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-3 46 Glycine max Gma.2241.1.A1_at AW350857 - - 4e-6 At1g51490 BGLU36 (BETA GLUCOSIDASE 36) C.G. S.X.
0.01 2e+0 34 Hordeum vulgare Contig10327_at Contig10327 - - 9e-3 At3g01610 CDC48C C.G. S.X.
0.02 2e+0 36 Oryza sativa Os05g0366800 9633.m02757 - Glycoside hydrolase, family 1 protein 2e-7 At4g22100 BGLU3 (BETA GLUCOSIDASE 2) C.G. S.X.
0.07 7e-5 50 Populus trichocarpa PtpAffx.139109.1.S1_s_at CX168297 hypothetical protein - 5e-3 At3g03640 BGLU25 (BETA GLUCOSIDASE 25) C.G. S.X.
0.03 2e-1 38 Triticum aestivum Ta.18240.1.S1_at CA632260 - - 3e+0 At5g58920 unknown protein C.G. S.X.
0.03 3e-4 46 Vitis vinifera 1620058_at CF212797 hypothetical protein LOC100241205 /// hypothetical protein LOC100258610 - 1e-3 At5g36890 BGLU42 (BETA GLUCOSIDASE 42) C.G. S.X.
0.01 1e+0 34 Zea mays Zm.3633.5.A1_at CF624117 peroxisomal multifunctional enzyme type 2 - 2e-9 At5g42890 SCP2 (STEROL CARRIER PROTEIN 2) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage