Gene omics information

Query gene ID At3g59950
Gene name autophagy 4b (APG4b)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7385.5At3g59950825165autophagy 4b (APG4b)F:peptidase activity;P:autophagy;C:chloroplast;MOFPS.X.H.G.
0.7586.9At4g051608258644-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeEncodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0, C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.S.X.H.G.
0.4050.8At1g09920837524TRAF-type zinc finger-relatedF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPS.X.H.G.
0.3643.6At1g71190843459SAG18 (SENESCENCE ASSOCIATED GENE 18)Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication.S.X.H.G.
0.2115.8At5g60620836183phospholipid/glycerol acyltransferase family proteinF:acyltransferase activity;P:triglyceride biosynthetic process, diacylglycerol biosynthetic process, metabolic process;C:plasma membrane, membrane;MOBPFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
30.299.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
17.599.5GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.799.5GSM265411Arabidopsis, whole roots, -Fe, replicate 1GSE10496Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
15.699.5GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.399.4GSM265413Arabidopsis, whole roots, -Fe, replicate 3GSE10496Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
14.199.4GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.099.4GSM265412Arabidopsis, whole roots, -Fe, replicate 2GSE10496Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
13.599.4GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.899.2GSM265425Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
10.799.2GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.734e-144511At2g44140819020autophagy 4a (APG4a)F:peptidase activity;P:autophagy;C:chloroplast;MOFPC.G.S.X.
0.017e-136At5g63810836501BGAL10 (beta-galactosidase 10)member of Glycoside Hydrolase Family 35C.G.S.X.
0.027e-136At5g08240830720unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBC.G.S.X.
0.017e-136At2g24130816947leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.026e-240Glycine maxPsAffx.C24000041_atPsAffx.C24000041--8e-2At3g18120F-box family protein-relatedC.G.S.X.
0.021e+034Hordeum vulgarerbags17j03_s_atrbags17j03--1e+0At2g46670pseudo-response regulator, putative / timing of CAB expression 1-like protein, putativeC.G.S.X.
0.102e-552Oryza sativaOs04g0682000AK069012.1-Autophagy 4a2e-5At3g59950autophagy 4b (APG4b)C.G.S.X.
0.032e-552Populus trichocarpaPtpAffx.14589.1.S1_atBU892879hypothetical protein-1e+0At2g14160nucleic acid binding / nucleotide bindingC.G.S.X.
0.052e-448Triticum aestivumTaAffx.122065.1.S1_atCA602827--1e-4At3g59950autophagy 4b (APG4b)C.G.S.X.
0.039e-754Vitis vinifera1612023_atCF207458hypothetical protein LOC100251780 /// hypothetical LOC100255545-8e-3At2g44140autophagy 4a (APG4a)C.G.S.X.
0.033e-136Zea maysZmAffx.439.1.A1_atAI676966autophagy-related 4-2e-1At3g18300unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006914The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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