Gene omics information

Query gene ID At3g59900
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At3g59900825160ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE)Encodes ARGOS (Auxin-Regulated Gene Involved in Organ Size). Inducible by auxin. Involved in lateral organ size control. Transgenic plants expressing sense or antisense ARGOS cDNA display enlarged or reduced aerial organs, respectively. The alteration in organ size is attributable mainly to changes in cell number and the duration of organ growth.S.X.H.G.
0.5368.6At2g18010816313auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POS.X.H.G.
0.4050.8At3g42800823322unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPS.X.H.G.
0.4050.8At4g16515827350unknown proteinF:molecular_function unknown;P:unknown;C:endomembrane system;PS.X.H.G.
0.1710.2At5g67020836837unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
82.999.9GSM179960Arabidopsis roots, ethylene treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlings
65.499.8GSM184912Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.309e-1683At2g44080819014ARL (ARGOS-LIKE)Encodes ARL, a gene similar to ARGOS involved in cell expansion-dependent organ growth. Upregulated by brassinosteroid. Acts downstream of BRI1.C.G.S.X.
0.035e-238At5g04170830295calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVAC.G.S.X.
0.022e-136At3g57340824901DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:plasma membrane;BOMFPAVC.G.S.X.
0.042e-136At3g21610821715-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPC.G.S.X.
0.032e-136At1g14205837981ribosomal protein L18 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular;BOPC.G.S.X.
0.037e-134At4g03270828000CYCD6F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus;MPOFVC.G.S.X.
0.037e-134At1g78560844192bile acid:sodium symporter family proteinF:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport;C:chloroplast, membrane;OBMPAC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.044e+032Glycine maxGmaAffx.24627.1.S1_atBU927294--2e-8At2g045403-oxoacyl-(acyl-carrier-protein) synthase II, putativeC.G.S.X.
0.046e+030Hordeum vulgareContig869_x_atContig869--4e-7At1g08880H2AXAC.G.S.X.
0.046e+032Oryza sativaOsAffx.602.1.S1_at---0C.G.S.X.
0.034e+032Populus trichocarpaPtpAffx.37038.2.S1_s_atAJ777067hypothetical protein-2e-17At4g14713PPD1 (PEAPOD 1)C.G.S.X.
0.043e+032Triticum aestivumTaAffx.22954.1.S1_atCA742748--3e+0At3g59900ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE)C.G.S.X.
0.059e-132Vitis vinifera1611422_atCB002682--1e+0At3g27250unknown proteinC.G.S.X.
0.033e-134Zea maysZm.6569.2.S1_a_atAY107413.1hypothetical protein LOC100276303-1e+0At3g59900ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE)C.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009733A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
XGO:0042127Any process that modulates the frequency, rate or extent of cell proliferation.
XGO:0046622Any process that activates or increases the frequency, rate or extent of growth of an organ of an organism.
XGO:0048638Any process that modulates the frequency, rate or extent of developmental growth.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage