CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g59900

Gene name ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At3g59900 825160 ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE) Encodes ARGOS (Auxin-Regulated Gene Involved in Organ Size). Inducible by auxin. Involved in lateral organ size control. Transgenic plants expressing sense or antisense ARGOS cDNA display enlarged or reduced aerial organs, respectively. The alteration in organ size is attributable mainly to changes in cell number and the duration of organ growth. S.X. H.G.
0.53 68.6 At2g18010 816313 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO S.X. H.G.
0.40 50.8 At3g42800 823322 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFP S.X. H.G.
0.40 50.8 At4g16515 827350 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P S.X. H.G.
0.17 10.2 At5g67020 836837 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
103.1 99.9 E-MEXP-715-raw-cel-1121836247
91.8 99.9 E-MEXP-715-raw-cel-1121836113
84.0 99.9 E-MEXP-715-raw-cel-1121836087
83.2 99.9 Millenaar_A2_ETH_Rep1_ATH1
82.9 99.9 GSM179960 Arabidopsis roots, ethylene treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
77.3 99.9 E-MEXP-715-raw-cel-1121835979
73.0 99.9 E-MEXP-715-raw-cel-1121836221
68.2 99.9 E-MEXP-715-raw-cel-1121836361
65.4 99.8 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
61.1 99.8 E-MEXP-715-raw-cel-1121836334
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.30 9e-16 83 At2g44080 819014 ARL (ARGOS-LIKE) Encodes ARL, a gene similar to ARGOS involved in cell expansion-dependent organ growth. Upregulated by brassinosteroid. Acts downstream of BRI1. C.G. S.X.
0.03 5e-2 38 At5g04170 830295 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.02 2e-1 36 At3g57340 824901 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:plasma membrane;BOMFPAV C.G. S.X.
0.04 2e-1 36 At3g21610 821715 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP C.G. S.X.
0.03 2e-1 36 At1g14205 837981 ribosomal protein L18 family protein F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;BOP C.G. S.X.
0.03 7e-1 34 At4g03270 828000 CYCD6 F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus;MPOFV C.G. S.X.
0.03 7e-1 34 At1g78560 844192 bile acid:sodium symporter family protein F:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport;C:chloroplast, membrane;OBMPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e+0 32 Glycine max GmaAffx.24627.1.S1_at BU927294 - - 2e-8 At2g04540 3-oxoacyl-(acyl-carrier-protein) synthase II, putative C.G. S.X.
0.04 6e+0 30 Hordeum vulgare Contig869_x_at Contig869 - - 4e-7 At1g08880 H2AXA C.G. S.X.
0.04 6e+0 32 Oryza sativa OsAffx.602.1.S1_at - - - 0 C.G. S.X.
0.03 4e+0 32 Populus trichocarpa PtpAffx.37038.2.S1_s_at AJ777067 hypothetical protein - 2e-17 At4g14713 PPD1 (PEAPOD 1) C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.22954.1.S1_at CA742748 - - 3e+0 At3g59900 ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE) C.G. S.X.
0.05 9e-1 32 Vitis vinifera 1611422_at CB002682 - - 1e+0 At3g27250 unknown protein C.G. S.X.
0.03 3e-1 34 Zea mays Zm.6569.2.S1_a_at AY107413.1 hypothetical protein LOC100276303 - 1e+0 At3g59900 ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009733 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
X GO:0042127 Any process that modulates the frequency, rate or extent of cell proliferation.
X GO:0046622 Any process that activates or increases the frequency, rate or extent of growth of an organ of an organism.
X GO:0048638 Any process that modulates the frequency, rate or extent of developmental growth.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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