Gene omics information

Query gene ID At3g59530
Gene name strictosidine synthase family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7486.1At3g59530825122strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, pollen exine formation;C:endomembrane system;BPMOFAS.X.H.G.
0.9897.8At1g62940842596ACOS5 (ACYL-COA SYNTHETASE 5)encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile.S.X.H.G.
0.9897.8At1g69500843283electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen bindingF:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:pollen exine formation;C:cellular_component unknown;MPFBOAVS.X.H.G.
0.9797.6At3g07450819933protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PS.X.H.G.
0.9797.6At3g42960823352ATA1 (ARABIDOPSIS TAPETUM 1)Arabidopsis homolog of TASSELSEED2. Expressed specifically in tapetal cells.S.X.H.G.
0.9797.6At4g20420827790tapetum-specific protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.9797.6At4g34850829637chalcone and stilbene synthase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:cellular_component unknown;PBOFS.X.H.G.
0.9697.3At3g11980820372MS2 (MALE STERILITY 2)Similar to fatty acid reductases.S.X.H.G.
0.9697.3At3g13220820512ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:membrane;BOMAFPVS.X.H.G.
0.9697.3At4g14080827044MEE48 (maternal effect embryo arrest 48)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:embryonic development ending in seed dormancy, pollen exine formation;C:endomembrane system;POS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
133.499.9E-MEXP-1592-raw-cel-1617526856
129.499.9E-MEXP-1592-raw-cel-1617526984
98.799.9GSM131576ATGE_31_A2GSE5632AtGenExpress: Developmental series (flowers and pollen)
97.199.9E-MEXP-1592-raw-cel-1617526848
93.799.9GSM131578ATGE_31_C2GSE5632AtGenExpress: Developmental series (flowers and pollen)
91.999.9E-MEXP-1592-raw-cel-1617526888
83.599.9E-MEXP-1592-raw-cel-1617526912
82.899.9GSM131577ATGE_31_B2GSE5632AtGenExpress: Developmental series (flowers and pollen)
81.899.9GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
79.099.9E-MEXP-1592-raw-cel-1617526816
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-242At5g08690830770ATP synthase beta chain 2, mitochondrialEncodes the mitochondrial ATP synthase beta-subunit. This subunit is encoded by a multigene family of three members (At5g08670, At5g08680, At5g08690) that shared 98% sequence identity at the amino acid level.C.G.S.X.
0.011e-242At5g08670830768ATP binding / hydrogen ion transporting ATP synthase, rotational mechanismEncodes the mitochondrial ATP synthase beta-subunit. This subunit is encoded by a multigene family of three members (At5g08670, At5g08680, At5g08690) that shared 98% sequence identity at the amino acid level.C.G.S.X.
0.012e-138At5g39980833995pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAC.G.S.X.
0.012e-138At5g08680830769ATP synthase beta chain, mitochondrial, putativeEncodes the mitochondrial ATP synthase beta-subunit. This subunit is encoded by a multigene family of three members (At5g08670, At5g08680, At5g08690) that shared 98% sequence identity at the amino acid level.C.G.S.X.
0.022e-138At2g38610818443KH domain-containing proteinF:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOC.G.S.X.
0.026e-136At5g04120830290phosphoglycerate/bisphosphoglycerate mutase family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.052e-1067Glycine maxGmaAffx.30262.1.A1_atBE820716--4e-11At3g59530strictosidine synthase family proteinC.G.S.X.
0.027e-238Hordeum vulgarerbah36c02_s_atrbah36c02--2e-11At5g60920COB (COBRA)C.G.S.X.
0.052e-242Oryza sativaOs03g0263600AK100452.1-Strictosidine synthase family protein1e-2At3g59530strictosidine synthase family proteinC.G.S.X.
0.421e-61238Populus trichocarpaPtpAffx.206942.1.S1_atpmrna13771hypothetical protein-8e-62At3g59530strictosidine synthase family proteinC.G.S.X.
0.042e-138Triticum aestivumTa.11286.1.A1_atBQ169778Hypothetical protein LOC778393-2e-1At3g59530strictosidine synthase family proteinC.G.S.X.
0.214e-21101Vitis vinifera1620570_atCB972058hypothetical LOC100242221-1e-20At3g59530strictosidine synthase family proteinC.G.S.X.
0.021e+034Zea maysZmAffx.62.1.A1_atAI665108coronatine-insensitive protein 1-3e+0At2g01370DNA-binding storekeeper protein-relatedC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010584The formation of the pollen exine. The reticulate pollen wall pattern consists of two layers, exine and intine.
CGO:0009821The chemical reactions and pathways resulting in the formation of alkaloids, nitrogen-containing natural products which are not otherwise classified as nonprotein amino acids, amines, peptides, amines, cyanogenic glycosides, glucosinolates, cofactors, phytohormones, or primary metabolite (such as purine or pyrimidine bases).
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00331Link to KaPPA-View 4Indole alkaloid biosynthesis



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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