CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g59530

Gene name strictosidine synthase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.74 86.1 At3g59530 825122 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, pollen exine formation;C:endomembrane system;BPMOFA S.X. H.G.
0.98 97.8 At1g62940 842596 ACOS5 (ACYL-COA SYNTHETASE 5) encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile. S.X. H.G.
0.98 97.8 At1g69500 843283 electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:pollen exine formation;C:cellular_component unknown;MPFBOAV S.X. H.G.
0.97 97.6 At3g07450 819933 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.97 97.6 At3g42960 823352 ATA1 (ARABIDOPSIS TAPETUM 1) Arabidopsis homolog of TASSELSEED2. Expressed specifically in tapetal cells. S.X. H.G.
0.97 97.6 At4g20420 827790 tapetum-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.97 97.6 At4g34850 829637 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:cellular_component unknown;PBOF S.X. H.G.
0.96 97.3 At3g11980 820372 MS2 (MALE STERILITY 2) Similar to fatty acid reductases. S.X. H.G.
0.96 97.3 At3g13220 820512 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:membrane;BOMAFPV S.X. H.G.
0.96 97.3 At4g14080 827044 MEE48 (maternal effect embryo arrest 48) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:embryonic development ending in seed dormancy, pollen exine formation;C:endomembrane system;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
133.4 99.9 E-MEXP-1592-raw-cel-1617526856
129.4 99.9 E-MEXP-1592-raw-cel-1617526984
98.7 99.9 GSM131576 ATGE_31_A2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
97.1 99.9 E-MEXP-1592-raw-cel-1617526848
93.7 99.9 GSM131578 ATGE_31_C2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
91.9 99.9 E-MEXP-1592-raw-cel-1617526888
83.5 99.9 E-MEXP-1592-raw-cel-1617526912
82.8 99.9 GSM131577 ATGE_31_B2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
81.8 99.9 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
79.0 99.9 E-MEXP-1592-raw-cel-1617526816
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-2 42 At5g08690 830770 ATP synthase beta chain 2, mitochondrial Encodes the mitochondrial ATP synthase beta-subunit. This subunit is encoded by a multigene family of three members (At5g08670, At5g08680, At5g08690) that shared 98% sequence identity at the amino acid level. C.G. S.X.
0.01 1e-2 42 At5g08670 830768 ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism Encodes the mitochondrial ATP synthase beta-subunit. This subunit is encoded by a multigene family of three members (At5g08670, At5g08680, At5g08690) that shared 98% sequence identity at the amino acid level. C.G. S.X.
0.01 2e-1 38 At5g39980 833995 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFBA C.G. S.X.
0.01 2e-1 38 At5g08680 830769 ATP synthase beta chain, mitochondrial, putative Encodes the mitochondrial ATP synthase beta-subunit. This subunit is encoded by a multigene family of three members (At5g08670, At5g08680, At5g08690) that shared 98% sequence identity at the amino acid level. C.G. S.X.
0.02 2e-1 38 At2g38610 818443 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFO C.G. S.X.
0.02 6e-1 36 At5g04120 830290 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-10 67 Glycine max GmaAffx.30262.1.A1_at BE820716 - - 4e-11 At3g59530 strictosidine synthase family protein C.G. S.X.
0.02 7e-2 38 Hordeum vulgare rbah36c02_s_at rbah36c02 - - 2e-11 At5g60920 COB (COBRA) C.G. S.X.
0.05 2e-2 42 Oryza sativa Os03g0263600 AK100452.1 - Strictosidine synthase family protein 1e-2 At3g59530 strictosidine synthase family protein C.G. S.X.
0.42 1e-61 238 Populus trichocarpa PtpAffx.206942.1.S1_at pmrna13771 hypothetical protein - 8e-62 At3g59530 strictosidine synthase family protein C.G. S.X.
0.04 2e-1 38 Triticum aestivum Ta.11286.1.A1_at BQ169778 Hypothetical protein LOC778393 - 2e-1 At3g59530 strictosidine synthase family protein C.G. S.X.
0.21 4e-21 101 Vitis vinifera 1620570_at CB972058 hypothetical LOC100242221 - 1e-20 At3g59530 strictosidine synthase family protein C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.62.1.A1_at AI665108 coronatine-insensitive protein 1 - 3e+0 At2g01370 DNA-binding storekeeper protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010584 The formation of the pollen exine. The reticulate pollen wall pattern consists of two layers, exine and intine.
C GO:0009821 The chemical reactions and pathways resulting in the formation of alkaloids, nitrogen-containing natural products which are not otherwise classified as nonprotein amino acids, amines, peptides, amines, cyanogenic glycosides, glucosinolates, cofactors, phytohormones, or primary metabolite (such as purine or pyrimidine bases).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00331 Indole alkaloid biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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