CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g59370

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.22 17.5 At3g59370 825106 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA S.X. H.G.
0.50 65.3 At5g15890 831446 unknown protein F:unknown;P:biological_process unknown;C:unknown;PMFOVBA S.X. H.G.
0.40 50.8 At4g31470 829274 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB S.X. H.G.
0.18 11.4 At2g47540 819367 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.17 10.2 At1g30990 839985 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
333.7 100.0 GSM226547 Slice5JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
329.2 100.0 GSM226537 L7SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
305.4 100.0 GSM226549 Slice7JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
296.5 100.0 GSM226550 Slice8JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
224.5 100.0 GSM226548 Slice6JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
183.2 100.0 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
171.4 100.0 GSM226538 L8SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
105.2 99.9 GSM226536 L6SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
94.4 99.9 GSM184502 Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
68.5 99.9 GSM266677 Arabidopsis, root cells, stele, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.68 1e-26 119 At1g12080 837760 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.19 4e-5 48 At1g62480 842545 vacuolar calcium-binding protein-related F:unknown;P:response to cadmium ion, response to salt stress;C:cellular_component unknown;OMBFPVA C.G. S.X.
0.04 2e-3 42 At1g80040 844344 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMO C.G. S.X.
0.03 9e-3 40 At3g09810 820139 isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative F:isocitrate dehydrogenase (NAD+) activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;P:tricarboxylic acid cycle, metabolic process;C:mitochondrion;BOMFAP C.G. S.X.
0.04 3e-2 38 At2g28090 817354 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMF C.G. S.X.
0.03 1e-1 36 At5g48610 834918 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.03 1e-1 36 At5g22570 832320 WRKY38 member of WRKY Transcription Factor; Group III C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-2 38 Glycine max PsAffx.C123000050_at PsAffx.C123000050 - - 1e-1 At3g59370 unknown protein C.G. S.X.
0.04 3e-1 34 Hordeum vulgare Contig4300_at Contig4300 - - 6e-9 At4g34700 complex 1 family protein / LVR family protein C.G. S.X.
0.07 3e-1 36 Oryza sativa OsAffx.7870.1.S1_at - - - 0 C.G. S.X.
0.05 7e-1 34 Populus trichocarpa PtpAffx.210592.1.S1_at pmrna20770 hypothetical protein - 2e-1 At4g33740 unknown protein C.G. S.X.
0.04 6e-1 34 Triticum aestivum TaAffx.107183.1.S1_at CA704724 - - 9e-1 At3g59370 unknown protein C.G. S.X.
0.04 4e-2 36 Vitis vinifera 1614484_at CF568809 - - 2e-1 At3g59370 unknown protein C.G. S.X.
0.04 2e-1 34 Zea mays Zm.2482.1.A1_at BM333007 16.9 kDa class I heat shock protein 1 - 1e-4 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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