CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g59340

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.45 58.3 At3g59340 825103 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPA S.X. H.G.
0.73 85.5 At5g06630 830551 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA S.X. H.G.
0.71 84.2 At5g19800 832100 hydroxyproline-rich glycoprotein family protein F:unknown;P:biological_process unknown;C:endomembrane system;MPOFBVA S.X. H.G.
0.71 84.2 At4g25220 828625 transporter, putative F:transporter activity;P:transport;C:unknown;BOFMAP S.X. H.G.
0.70 83.5 At2g25240 817062 serine-type endopeptidase inhibitor F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVBPOAF S.X. H.G.
0.69 82.9 At3g54590 824624 ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN) Encodes a hydroxyproline-rich glycoprotein. S.X. H.G.
0.69 82.9 At5g19790 832099 RAP2.11 (related to AP2 11) encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family (RAP2.11). The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. S.X. H.G.
0.68 82.2 At2g24980 817037 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA S.X. H.G.
0.68 82.2 At5g06640 830552 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVA S.X. H.G.
0.65 79.6 At3g60280 825199 UCC3 (UCLACYANIN 3) Encodes blue copper-binding protein III. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
175.3 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
142.6 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
134.0 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
121.3 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
118.1 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
104.8 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
103.3 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
95.9 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
93.9 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
93.5 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.73 0 712 At3g59310 825100 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBA C.G. S.X.
0.60 1e-106 387 At3g59320 825101 integral membrane protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;OBMPFA C.G. S.X.
0.35 1e-47 190 At3g59330 825102 anthocyanin-related membrane protein family F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB C.G. S.X.
0.01 5e-1 36 At3g24715 822069 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA C.G. S.X.
0.01 2e+0 34 At4g14180 827058 AtPRD1 (Arabidopsis thaliana Putative Recombination initiation Defect 1) Encodes a protein that is involved in meiotic recombination and is required for meiotic double strand break repair. C.G. S.X.
0.01 2e+0 34 At3g55950 824761 CCR3 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 3) F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-1 38 Glycine max GmaAffx.64064.1.S1_at AW831824 - - 3e-7 At3g59310 unknown protein C.G. S.X.
0.02 4e+0 32 Hordeum vulgare Contig6025_at Contig6025 - - 6e-2 At4g28610 PHR1 (PHOSPHATE STARVATION RESPONSE 1) C.G. S.X.
0.11 2e-5 52 Oryza sativa OsAffx.30129.1.S1_at - - - 0 C.G. S.X.
0.35 1e-11 71 Populus trichocarpa PtpAffx.211863.1.S1_at pmrna23283 hypothetical protein - 6e-31 At3g59310 unknown protein C.G. S.X.
0.02 2e+0 34 Triticum aestivum Ta.22094.2.A1_at BG907426 - - 3e+0 At3g16640 TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1610579_at CF404677 - - 3e+0 At4g11760 LCR17 (Low-molecular-weight cysteine-rich 17) C.G. S.X.
0.03 8e-1 34 Zea mays Zm.19309.1.A1_at BM074583 solute carrier family 35, member F1 - 2e+0 At3g59320 integral membrane protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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