Gene omics information

Query gene ID At3g59220
Gene name PRN (PIRIN)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6075.7At3g59220825091PRN (PIRIN)encodes a cupin-domain containing protein that is similar to pirins which interact with a CCAAT box binding transcription factor. The protein interacts with GPA1 (G protein alpha-subunit) in vitro. Mutants in the gene are affected in germination and early seedling development.S.X.H.G.
0.3235.7At3g62270825400anion exchange family proteinF:anion exchanger activity;P:anion transport;C:integral to membrane, membrane;MFPOBVS.X.H.G.
0.3032.1At5g66690836802UGT72E2UGT72E2 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl aldehydes as well as sinapyl- and coniferyl alcohol. The enzyme is thought to be involved in lignin metabolism. A knockdown mutant line (72E2KD) was obtained using RNAi silencing. A twofold reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype. In comparison, both knockout and knockdown lines of UGT72E1 and UGT72E3, respectively, failed to display the same reduction in phenylpropanoid 4-O-glucosides.S.X.H.G.
0.2830.3At5g43690834389sulfotransferase family proteinF:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MPOBFS.X.H.G.
0.2726.2At4g18360827563(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeF:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:peroxisome;OBFMPAS.X.H.G.
0.2624.4At3g45650823707NAXT1 (NITRATE EXCRETION TRANSPORTER1)Encodes a nitrate efflux transporter NAXT1 (for NITRATE EXCRETION TRANSPORTER1). Localized to the plasma membrane. NAXT1 belongs to a subclass of seven NAXT members from the large NITRATE TRANSPORTER1/PEPTIDE TRANSPORTER family and is mainly expressed in the cortex of mature roots.S.X.H.G.
0.2522.6At2g26290817169ARSK1 (root-specific kinase 1)F:kinase activity;P:response to salt stress, response to water deprivation, response to abscisic acid stimulus;C:unknown;MPOBFVAS.X.H.G.
0.2522.6At2g29480817497ATGSTU2 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 2)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).S.X.H.G.
0.2522.6At3g26470822252-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.2522.6At3g14940820723ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
314.0100.0GSM205156protoplast_controlDNA_rep1GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
193.7100.0GSM205160protoplast_controlDNA_rep2GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
77.699.9GSM133126S0_2H_BGSE5688AtGenExpress: Response to sulfate limitation
61.299.8GSM131127AtGen_B-13_1-6-4_REP1_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
56.099.8GSM204026protoplast_control_rep1GSE8248Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
48.099.8GSM133125S0_2H_AGSE5688AtGenExpress: Response to sulfate limitation
47.499.8GSM131342AtGen_6-4222_Droughtstress-Roots-1.0h_Rep2GSE5624AtGenExpress: Stress Treatments (Drought stress)
43.399.8GSM133138S1500_2H_BGSE5688AtGenExpress: Response to sulfate limitation
37.199.7GSM133137S1500_2H_AGSE5688AtGenExpress: Response to sulfate limitation
34.799.7GSM184504Pericycle root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.699e-135480At3g59260825095pirin, putativeF:calmodulin binding;P:unknown;C:cellular_component unknown;BOFPMAC.G.S.X.
0.662e-70266At2g43120818914pirin, putativeF:calmodulin binding;P:biological_process unknown;C:plasma membrane;BOFPMAC.G.S.X.
0.051e-448At1g50590841481pirin, putativeF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;BOFPMAC.G.S.X.
0.013e-240At4g20850827833TPP2 (TRIPEPTIDYL PEPTIDASE II)Tripeptidyl Peptidase II. Ser protease that assembles into a large oligomeric complex containing two proteins of 153 and 142 kD that are derived from a single TPP2 gene, with the smaller version missing part of the C-terminal end. Not essential, based on the lack of phenotype of a T-DNA disruption mutant.C.G.S.X.
0.014e-136At5g18700831988EMB3013 (embryo defective 3013)F:protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MPOBFVAC.G.S.X.
0.014e-136At1g32180840110ATCSLD6encodes a gene similar to cellulose synthaseC.G.S.X.
0.012e+034At5g66690836802UGT72E2UGT72E2 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl aldehydes as well as sinapyl- and coniferyl alcohol. The enzyme is thought to be involved in lignin metabolism. A knockdown mutant line (72E2KD) was obtained using RNAi silencing. A twofold reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype. In comparison, both knockout and knockdown lines of UGT72E1 and UGT72E3, respectively, failed to display the same reduction in phenylpropanoid 4-O-glucosides.C.G.S.X.
0.012e+034At4g23940828494FtsH protease, putativeF:in 7 functions;P:proteolysis;C:chloroplast;OBMFPAVC.G.S.X.
0.012e+034At3g05970819767LACS6 (long-chain acyl-CoA synthetase 6)encode peroxisomal long-chain acyl-CoA synthetase (LACS) isozymesC.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.092e-757Glycine maxGmaAffx.57427.1.S1_atBI321588--5e-17At2g43120pirin, putativeC.G.S.X.
0.023e+032Hordeum vulgareContig20334_atContig20334--4e+0At1g09760U2A' (U2 small nuclear ribonucleoprotein A)C.G.S.X.
0.031e+132Oryza sativaOsAffx.8760.1.S1_at---0C.G.S.X.
0.171e-1791Populus trichocarpaPtpAffx.66821.1.S1_atBU813058hypothetical protein-4e-27At2g43120pirin, putativeC.G.S.X.
0.034e-136Triticum aestivumTa.26098.3.S1_atBJ237254EDR1 protein-1e+0At2g14890AGP9 (ARABINOGALACTAN PROTEIN 9)C.G.S.X.
0.032e+032Vitis vinifera1621880_s_atCK138206.1hypothetical protein LOC100262668-3e+0At5g14360ubiquitin family proteinC.G.S.X.
0.021e+130Zea maysZmAffx.74.1.A1_atAI665196Hypothetical protein LOC100193550-5e-8At5g38720unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009737A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
NGO:0010244A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the detection of a low fluence blue light stimulus by the blue low-fluence system. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm. The blue low-fluence system responds to blue light at or below 0.1 micromols/m2. In certain species excitation of the blue low fluence system induces the transcription of a number of nuclear and plastid coded genes.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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