CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g59220

Gene name PRN (PIRIN)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.60 75.7 At3g59220 825091 PRN (PIRIN) encodes a cupin-domain containing protein that is similar to pirins which interact with a CCAAT box binding transcription factor. The protein interacts with GPA1 (G protein alpha-subunit) in vitro. Mutants in the gene are affected in germination and early seedling development. S.X. H.G.
0.32 35.7 At3g62270 825400 anion exchange family protein F:anion exchanger activity;P:anion transport;C:integral to membrane, membrane;MFPOBV S.X. H.G.
0.30 32.1 At5g66690 836802 UGT72E2 UGT72E2 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl aldehydes as well as sinapyl- and coniferyl alcohol. The enzyme is thought to be involved in lignin metabolism. A knockdown mutant line (72E2KD) was obtained using RNAi silencing. A twofold reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype. In comparison, both knockout and knockdown lines of UGT72E1 and UGT72E3, respectively, failed to display the same reduction in phenylpropanoid 4-O-glucosides. S.X. H.G.
0.28 30.3 At5g43690 834389 sulfotransferase family protein F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MPOBF S.X. H.G.
0.27 26.2 At4g18360 827563 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative F:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:peroxisome;OBFMPA S.X. H.G.
0.26 24.4 At3g45650 823707 NAXT1 (NITRATE EXCRETION TRANSPORTER1) Encodes a nitrate efflux transporter NAXT1 (for NITRATE EXCRETION TRANSPORTER1). Localized to the plasma membrane. NAXT1 belongs to a subclass of seven NAXT members from the large NITRATE TRANSPORTER1/PEPTIDE TRANSPORTER family and is mainly expressed in the cortex of mature roots. S.X. H.G.
0.25 22.6 At2g26290 817169 ARSK1 (root-specific kinase 1) F:kinase activity;P:response to salt stress, response to water deprivation, response to abscisic acid stimulus;C:unknown;MPOBFVA S.X. H.G.
0.25 22.6 At2g29480 817497 ATGSTU2 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 2) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.25 22.6 At3g26470 822252 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.25 22.6 At3g14940 820723 ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3) One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
314.0 100.0 GSM205156 protoplast_controlDNA_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
193.7 100.0 GSM205160 protoplast_controlDNA_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
77.6 99.9 GSM133126 S0_2H_B GSE5688 AtGenExpress: Response to sulfate limitation
61.2 99.8 GSM131127 AtGen_B-13_1-6-4_REP1_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
56.0 99.8 GSM204026 protoplast_control_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
48.0 99.8 GSM133125 S0_2H_A GSE5688 AtGenExpress: Response to sulfate limitation
47.4 99.8 GSM131342 AtGen_6-4222_Droughtstress-Roots-1.0h_Rep2 GSE5624 AtGenExpress: Stress Treatments (Drought stress)
43.3 99.8 GSM133138 S1500_2H_B GSE5688 AtGenExpress: Response to sulfate limitation
37.1 99.7 GSM133137 S1500_2H_A GSE5688 AtGenExpress: Response to sulfate limitation
34.7 99.7 GSM184504 Pericycle root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.69 9e-135 480 At3g59260 825095 pirin, putative F:calmodulin binding;P:unknown;C:cellular_component unknown;BOFPMA C.G. S.X.
0.66 2e-70 266 At2g43120 818914 pirin, putative F:calmodulin binding;P:biological_process unknown;C:plasma membrane;BOFPMA C.G. S.X.
0.05 1e-4 48 At1g50590 841481 pirin, putative F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;BOFPMA C.G. S.X.
0.01 3e-2 40 At4g20850 827833 TPP2 (TRIPEPTIDYL PEPTIDASE II) Tripeptidyl Peptidase II. Ser protease that assembles into a large oligomeric complex containing two proteins of 153 and 142 kD that are derived from a single TPP2 gene, with the smaller version missing part of the C-terminal end. Not essential, based on the lack of phenotype of a T-DNA disruption mutant. C.G. S.X.
0.01 4e-1 36 At5g18700 831988 EMB3013 (embryo defective 3013) F:protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 4e-1 36 At1g32180 840110 ATCSLD6 encodes a gene similar to cellulose synthase C.G. S.X.
0.01 2e+0 34 At5g66690 836802 UGT72E2 UGT72E2 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl aldehydes as well as sinapyl- and coniferyl alcohol. The enzyme is thought to be involved in lignin metabolism. A knockdown mutant line (72E2KD) was obtained using RNAi silencing. A twofold reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype. In comparison, both knockout and knockdown lines of UGT72E1 and UGT72E3, respectively, failed to display the same reduction in phenylpropanoid 4-O-glucosides. C.G. S.X.
0.01 2e+0 34 At4g23940 828494 FtsH protease, putative F:in 7 functions;P:proteolysis;C:chloroplast;OBMFPAV C.G. S.X.
0.01 2e+0 34 At3g05970 819767 LACS6 (long-chain acyl-CoA synthetase 6) encode peroxisomal long-chain acyl-CoA synthetase (LACS) isozymes C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 2e-7 57 Glycine max GmaAffx.57427.1.S1_at BI321588 - - 5e-17 At2g43120 pirin, putative C.G. S.X.
0.02 3e+0 32 Hordeum vulgare Contig20334_at Contig20334 - - 4e+0 At1g09760 U2A' (U2 small nuclear ribonucleoprotein A) C.G. S.X.
0.03 1e+1 32 Oryza sativa OsAffx.8760.1.S1_at - - - 0 C.G. S.X.
0.17 1e-17 91 Populus trichocarpa PtpAffx.66821.1.S1_at BU813058 hypothetical protein - 4e-27 At2g43120 pirin, putative C.G. S.X.
0.03 4e-1 36 Triticum aestivum Ta.26098.3.S1_at BJ237254 EDR1 protein - 1e+0 At2g14890 AGP9 (ARABINOGALACTAN PROTEIN 9) C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1621880_s_at CK138206.1 hypothetical protein LOC100262668 - 3e+0 At5g14360 ubiquitin family protein C.G. S.X.
0.02 1e+1 30 Zea mays ZmAffx.74.1.A1_at AI665196 Hypothetical protein LOC100193550 - 5e-8 At5g38720 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009737 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
N GO:0010244 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the detection of a low fluence blue light stimulus by the blue low-fluence system. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm. The blue low-fluence system responds to blue light at or below 0.1 micromols/m2. In certain species excitation of the blue low fluence system induces the transcription of a number of nuclear and plastid coded genes.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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