Gene omics information

Query gene ID At3g59080
Gene name aspartyl protease family protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4457.2At3g59080825077aspartyl protease family proteinF:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOS.X.H.G.
0.6075.7At4g39640830118GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.S.X.H.G.
0.5773.8At1g55450841992embryo-abundant protein-relatedF:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOAS.X.H.G.
0.4659.8At1g29690839846CAD1 (constitutively activated cell death 1)Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity.S.X.H.G.
0.4659.8At4g34150829563C2 domain-containing proteinF:unknown;P:response to cold;C:unknown;MPFOBVAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
62.399.8GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
59.799.8GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
58.299.8GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
50.099.8GSM39197RRE1_Chitin3GSE2169rre1 and rre2 mutants
45.899.8GSM39213RRE2_Chitin3GSE2169rre1 and rre2 mutants
45.099.8GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
43.699.8GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transition
43.499.8GSM39196RRE1_Chitin2GSE2169rre1 and rre2 mutants
42.599.8GSM39212RRE2_Chitin2GSE2169rre1 and rre2 mutants
41.499.8GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.662e-162573At2g42980818900aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFOBC.G.S.X.
0.025e-240At3g60260825197phagocytosis and cell motility protein ELMO1-relatedF:molecular_function unknown;P:phagocytosis;C:cytoskeleton;MPOFC.G.S.X.
0.025e-240At1g18480838428calcineurin-like phosphoesterase family proteinF:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;OBPFAVC.G.S.X.
0.022e-138At5g52960835373unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPC.G.S.X.
0.012e-138At4g37590829914NPY5 (NAKED PINS IN YUC MUTANTS 5)A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.C.G.S.X.
0.012e-138At2g33170817878leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxGma.13217.1.S1_atCD391191--3e-1At3g50460HR2 (HOMOLOG OF RPW8 2)C.G.S.X.
0.024e-136Hordeum vulgareContig14245_atContig14245--4e-1At5g25190ethylene-responsive element-binding protein, putativeC.G.S.X.
0.024e-138Oryza sativaOs.39795.1.S1_at---0C.G.S.X.
0.248e-859Populus trichocarpaPtpAffx.205668.1.S1_atpmrna11190hypothetical protein-5e-8At3g59080aspartyl protease family proteinC.G.S.X.
0.028e-136Triticum aestivumTaAffx.83228.1.S1_atCA660041--2e-1At5g11500unknown proteinC.G.S.X.
0.024e+032Vitis vinifera1622808_atCF209782--4e+0At4g36500unknown proteinC.G.S.X.
0.021e+034Zea maysZmAffx.365.1.A1_atAI673842--1e+1At5g39580peroxidase, putativeC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006508The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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