Gene omics information

Query gene ID At3g59040
Gene name pentatricopeptide (PPR) repeat-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At3g59040825073pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBAS.X.H.G.
0.5773.8At3g03630821203CS26O-acetylserine (thiol) lyaseS.X.H.G.
0.5673.0At1g69200843251kinaseF:kinase activity;P:acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:nucleoid;BOPAMFS.X.H.G.
0.4761.2At4g09730826559DEAD/DEAH box helicase, putativeF:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:chloroplast;BOMFPAVS.X.H.G.
0.4659.8At1g63680842672MUREEncodes AtMurE, a homolog of the bacterial MurE that catalyze the ATP-dependent formation of UDP-N-acetylmuramic acid-tripeptide in bacterial peptidoglycan biosynthesis. Localized to plastids. AtMurE is involved in chloroplast biogenesis.S.X.H.G.
0.4253.9At3g54090824576pfkB-type carbohydrate kinase family proteinF:kinase activity;P:acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:nucleus, chloroplast, nucleoid, cytoplasm;BOPAMFS.X.H.G.
0.2522.6At5g64580836579AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, metalloendopeptidase activity, nucleotide binding, zinc ion binding, ATP binding;P:unknown;C:chloroplast, chloroplast envelope;BOMFPAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
14.599.4E-ATMX-35-raw-cel-1574334928
12.599.3E-MEXP-300-raw-cel-460515139
11.599.3E-ATMX-35-raw-cel-1574334896
11.399.3GSM157393Sakakibara_1-12_DMSO-treatment-mutant_Rep3_ATH1GSE6832Cytokinin treatment on aerial parts of seedlings
11.299.2GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
11.199.2GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
10.799.2E-MEXP-300-raw-cel-460515357
10.699.2E-MEXP-300-raw-cel-460514993
9.599.1GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
9.499.1GSM157391Sakakibara_1-10_DMSO-treatment-mutant_Rep1_ATH1GSE6832Cytokinin treatment on aerial parts of seedlings
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-242At2g20280816547zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBAC.G.S.X.
0.026e-240At5g04980830380endonuclease/exonuclease/phosphatase family proteinF:hydrolase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MFPOC.G.S.X.
0.016e-240At1g12760837832protein binding / ubiquitin-protein ligase/ zinc ion bindingF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:chloroplast;PMOFVBC.G.S.X.
0.026e-240At1g47970841215unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVAC.G.S.X.
0.022e-138At5g15140831366aldose 1-epimerase family proteinF:aldose 1-epimerase activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVAC.G.S.X.
0.012e-138At5g22640832327emb1211 (embryo defective 1211)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;OMFBPVAC.G.S.X.
0.012e-138At5g13260831167unknown proteinF:unknown;P:biological_process unknown;C:unknown;MFOPBAVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e-138Glycine maxGmaAffx.36671.1.S1_atBI784997--6e-1At2g27250CLV3 (CLAVATA3)C.G.S.X.
0.041e-138Hordeum vulgareContig25611_atContig25611--2e-2At1g68870unknown proteinC.G.S.X.
0.175e-1687Oryza sativaOs08g0191900AK067587.1-TPR-like domain containing protein3e-16At3g59040pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.092e-1171Populus trichocarpaPtpAffx.64772.1.S1_atCK107609hypothetical protein-4e-12At3g59040pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.076e-550Triticum aestivumTaAffx.38202.1.S1_atBJ245313--1e-5At3g59040pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.023e-136Vitis vinifera1609571_atBQ795107hypothetical protein LOC100258119-6e-12At4g36860zinc ion bindingC.G.S.X.
0.147e-1891Zea maysZm.15758.1.S1_atCD446592--2e-17At3g59040pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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