Gene omics information

Query gene ID At3g58860
Gene name F-box family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8894.0At3g58860825055F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7888.6At5g62160836336AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)member of Fe(II) transporter isolog familyS.X.H.G.
0.7687.4At2g35460818111harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinF:unknown;P:unknown;C:cellular_component unknown;PS.X.H.G.
0.7687.4At2g06960815265oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;PBOFMS.X.H.G.
0.7385.5At5g46310834674WRKY family transcription factorF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;FPS.X.H.G.
0.7284.8At2g188203768266transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.7184.2At2g27520817298F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMS.X.H.G.
0.7083.5At2g24840817021AGL61 (AGAMOUS-LIKE 61)Encodes a member of the Agamous-like family of transcription factors. Localized to the nucleus in the central cell and endosperm of the female gametophyte. Loss of function mutations show reduced female fertility. Fifty percent of ovules have defective central cells with abnormal morphology and patterns of gene expression. Upon fertilization 50% of seeds abort. Using yeast two hybrid assays AGL61 was shown to interact with AGL80, another MADS box gene with similar defects in ovule development. These data suggest that AGL61 and 80 together are required for proper differentiation of the central cell.S.X.H.G.
0.6982.9At3g10830820252unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6882.2At4g17580827475Bax inhibitor-1 family protein / BI-1 family proteinF:molecular_function unknown;P:negative regulation of apoptosis, regulation of apoptosis, apoptosis;C:integral to membrane;BMOFPVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
689.4100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
253.0100.0GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
244.7100.0GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
106.199.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
86.499.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
86.099.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
83.399.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
78.099.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
76.299.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
72.899.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.291e-33145At3g58900825059F-box family proteinF:unknown;P:biological_process unknown;C:endomembrane system;PMC.G.S.X.
0.132e-25117At3g03040821150F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.263e-21103At3g59000825069F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.261e-20101At5g38396833826F-box family proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.171e-20101At3g58940825063F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFC.G.S.X.
0.162e-1687At5g38386833823F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.022e-138Glycine maxHgAffx.18142.1.S1_atCB238552--2e-1At1g70390F-box family proteinC.G.S.X.
0.021e+034Hordeum vulgareContig25256_atContig25256--7e-2At2g43230serine/threonine protein kinase, putativeC.G.S.X.
0.025e+034Oryza sativaOs07g06249009635.m04329-SKP11e+0At3g21840ASK7 (ARABIDOPSIS SKP1-LIKE 7)C.G.S.X.
0.026e-240Populus trichocarpaPtpAffx.209678.1.S1_atpmrna19104hypothetical protein-5e-5At5g38386F-box family proteinC.G.S.X.
0.027e-136Triticum aestivumTaAffx.6378.1.S1_atCA686976--3e+0At2g21600ATRER1BC.G.S.X.
0.023e+032Vitis vinifera1614516_atCD797320--1e-1At1g48940plastocyanin-like domain-containing proteinC.G.S.X.
0.025e+032Zea maysZmAffx.172.1.A1_atAI668238--3e+0Atmg00240-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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