CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g58810

Gene name MTPA2 (METAL TOLERANCE PROTEIN A2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.60 75.7 At3g58810 825050 MTPA2 (METAL TOLERANCE PROTEIN A2) Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane. S.X. H.G.
0.89 94.6 At1g74770 843816 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVB S.X. H.G.
0.75 86.9 At4g31940 829324 CYP82C4 member of CYP82C S.X. H.G.
0.67 81.6 At1g74760 - - - S.X. H.G.
0.29 30.3 At1g14185 837978 glucose-methanol-choline (GMC) oxidoreductase family protein F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
170.5 100.0 GSM157315 Hammond_3-5_Potassium-starved-root_Rep1_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
162.7 99.9 GSM265432 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
142.6 99.9 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
118.8 99.9 GSM265471 Arabidopsis, whole roots, -Fe, 48 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
117.2 99.9 GSM142733 CH001_ATH1_A012-Hampt-c1c GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
107.0 99.9 GSM265473 Arabidopsis, whole roots, -Fe, 72 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
105.1 99.9 GSM265474 Arabidopsis, whole roots, -Fe, 72 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
104.6 99.9 GSM157324 Hammond_3-17_Potassium-starved-root_Rep3_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
102.8 99.9 GSM157327 Hammond_3-11_Potassium-starved-root_Rep2_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
102.1 99.9 GSM265472 Arabidopsis, whole roots, -Fe, 48 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.17 1e-14 81 At2g46800 819293 ZAT (ZINC TRANSPORTER OF ARABIDOPSIS THALIANA) Encodes a member of the zinc transporter (ZAT) and cation diffusion facilitator (CDF) families. It is expressed throughout the plant, especially in dividing, differentiating and expanding cells. The protein is localized to the vacuolar membrane. Mediates Zn ion homeostasis. C.G. S.X.
0.04 1e-5 52 At3g61940 825367 MTPA1 member of Zinc transporter (ZAT) family C.G. S.X.
0.02 2e-1 38 At1g01500 839430 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 6e-1 36 At1g20950 838689 pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus;C:pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex;BOPAM C.G. S.X.
0.01 3e+0 34 At5g54690 835558 GAUT12 (GALACTURONOSYLTRANSFERASE 12) Encodes a protein with putative galacturonosyltransferase activity. Mutants defective in this gene displayed a notable reduction in xylose (>50%) in the cell walls from stems and roots and a reduction in cellulose (~25%). C.G. S.X.
0.01 3e+0 34 At5g18510 831969 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF C.G. S.X.
0.02 3e+0 34 At5g16360 831497 NC domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-3 46 Glycine max Gma.9168.1.S1_at CA802253 - - 2e-4 At3g58810 MTPA2 (METAL TOLERANCE PROTEIN A2) C.G. S.X.
0.02 5e+0 32 Hordeum vulgare Contig14462_at Contig14462 - - 1e+0 At4g00670 DNA binding C.G. S.X.
0.20 4e-16 87 Oryza sativa Os05g0128400 AY266290.1 - Metal tolerance protein 1 1e-18 At3g58810 MTPA2 (METAL TOLERANCE PROTEIN A2) C.G. S.X.
0.22 2e-14 81 Populus trichocarpa Ptp.6226.1.S1_at DN500519 metal tolerance protein - 1e-14 At3g58810 MTPA2 (METAL TOLERANCE PROTEIN A2) C.G. S.X.
0.02 7e-1 36 Triticum aestivum TaAffx.53325.1.S1_at CA693585 - - 4e+0 At3g11770 nucleic acid binding C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1616938_at CA814215 - - 9e-1 At5g38470 DNA repair protein RAD23, putative C.G. S.X.
0.07 1e-9 63 Zea mays Zm.11953.1.S1_at CO531764 metal tolerance protein A2 - 4e-6 At2g46800 ZAT (ZINC TRANSPORTER OF ARABIDOPSIS THALIANA) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010299 Any process that reduces or removes the toxicity of cobalt ion. These include transport of cobalt away from sensitive areas and to compartments or complexes whose purpose is sequestration of cobalt ion.
X GO:0010312 Any process that reduces or removes the toxicity of zinc ion. These include transport of zinc away from sensitive areas and to compartments or complexes whose purpose is sequestration of zinc ion.
X GO:0010043 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus.
C GO:0006829 The directed movement of zinc (Zn) ions into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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