CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g58730

Gene name vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g58730 825042 vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) F:ATPase activity, coupled to transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:vacuolar membrane, plasma membrane, vacuole, membrane, plant-type vacuole;BMAOFP S.X. H.G.
0.89 94.6 At3g13410 820541 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P S.X. H.G.
0.77 88.0 At1g78900 844228 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) Encodes catalytic subunit A of the vacuolar ATP synthase. Mutants are devoid of vacuolar ATPase activity as subunit A is encoded only by this gene and show strong defects in male gametophyte development and in Golgi stack morphology. S.X. H.G.
0.75 86.9 At3g24160 822002 PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN) Encodes a putative Type 1 membrane protein (PMP). S.X. H.G.
0.57 73.8 At3g42050 823170 vacuolar ATP synthase subunit H family protein F:binding, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:vacuolar membrane, chloroplast, plasma membrane, vacuole, plant-type vacuole;MFOP S.X. H.G.
0.56 73.0 At5g18520 831970 - F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.5 98.6 GSM133258 RIKEN-GODA13B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
6.1 98.5 GSM133272 RIKEN-GODA7B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
5.9 98.5 GSM128663 Underwood_1-16_Cor-hrpS-5x10e7-10h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
5.5 98.3 E-MEXP-711-raw-cel-1563002537
5.0 98.1 GSM133266 RIKEN-GODA4B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
5.0 98.1 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
4.9 98.1 GSM128674 Underwood_1-26_hrpA-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
4.9 98.1 GSM265422 Arabidopsis, root, longitudinal zone 3, standard conditions, rep1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
4.8 98.0 GSM133262 RIKEN-GODA2B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
4.7 98.0 GSM133270 RIKEN-GODA6B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-2 40 At5g11800 831053 KEA6 member of Putative potassium proton antiporter family C.G. S.X.
0.03 3e-2 40 At4g02200 827516 drought-responsive family protein F:unknown;P:response to water deprivation;C:unknown;PM C.G. S.X.
0.01 1e-1 38 At2g29190 817468 APUM2 (Arabidopsis Pumilio 2) F:RNA binding, binding;P:biological_process unknown;C:cellular_component unknown;FOMPB C.G. S.X.
0.01 1e-1 38 At2g29200 817469 APUM1 (Arabidopsis Pumilio 1) F:RNA binding, binding;P:unknown;C:cellular_component unknown;FOMP C.G. S.X.
0.02 1e-1 38 At1g13020 837859 eukaryotic translation initiation factor, putative (EIF4B5) F:translation initiation factor activity;P:biological_process unknown;C:cellular_component unknown;MBOPFVA C.G. S.X.
0.01 4e-1 36 At4g26970 828805 aconitate hydratase/ copper ion binding F:aconitate hydratase activity, copper ion binding;P:response to cadmium ion;C:mitochondrion, chloroplast;OBMFAP C.G. S.X.
0.01 4e-1 36 At2g29140 817463 APUM3 (Arabidopsis Pumilio 3) F:RNA binding, binding;P:unknown;C:plasma membrane;FOMPB C.G. S.X.
0.02 2e+0 34 At5g61160 836237 AACT1 (anthocyanin 5-aromatic acyltransferase 1) F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 7e-16 85 Glycine max Gma.17372.2.A1_at AW310753 - - 3e-16 At3g58730 vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) C.G. S.X.
0.03 7e-1 34 Hordeum vulgare HVSMEk0001A06r2_s_at HVSMEk0001A06r2 - - 7e-5 At2g40590 40S ribosomal protein S26 (RPS26B) C.G. S.X.
0.14 9e-19 95 Oryza sativa Os04g0643100 AK067501.1 - - 9e-19 At3g58730 vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) C.G. S.X.
0.37 3e-39 163 Populus trichocarpa PtpAffx.66419.1.S1_at CV237594 - - 4e-39 At3g58730 vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) C.G. S.X.
0.14 1e-13 77 Triticum aestivum Ta.21235.1.S1_x_at CA647047 - - 2e-13 At3g58730 vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) C.G. S.X.
0.33 2e-22 105 Vitis vinifera 1611102_at CF603491 hypothetical protein LOC100259129 - 4e-22 At3g58730 vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) C.G. S.X.
0.08 1e-11 69 Zea mays Zm.1234.1.A1_at BM073436 vacuolar ATP synthase subunit D 1 - 5e-11 At3g58730 vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0015986 The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00190 Oxidative phosphorylation
01100 Metabolic pathways
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