CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g58550

Gene name protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.68 82.2 At3g58550 825024 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P S.X. H.G.
0.92 96.0 At5g58860 836003 CYP86A1 (CYTOCHROME P450 86 A1) Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue. S.X. H.G.
0.91 95.6 At2g35380 818105 peroxidase 20 (PER20) (P20) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB S.X. H.G.
0.90 95.1 At5g44550 834482 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.89 94.6 At2g23540 816886 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.84 91.9 At1g78990 844239 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB S.X. H.G.
0.83 91.4 At2g47200 819333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.81 90.4 At5g37690 833748 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.80 89.8 At4g20390 827787 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.77 88.0 At3g44540 823579 FAR4 (FATTY ACID REDUCTASE 4) F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBPOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
93.6 99.9 GSM184936 Arabidopsis, whole roots, 140 mM NaCl, 32 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
88.7 99.9 E-MEXP-791-raw-cel-1122937587
75.5 99.9 E-ATMX-1-raw-cel-1112746267
71.2 99.9 E-MEXP-791-raw-cel-1122937623
70.7 99.9 GSM184935 Arabidopsis, whole roots, 140 mM NaCl, 32 hour, replicate 1 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
70.0 99.9 GSM184934 Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
60.6 99.8 E-ATMX-1-raw-cel-1112746209
50.2 99.8 GSM131306 AtGen_6-2622_Osmoticstress-Roots-24.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
47.1 99.8 GSM133717 Urwin_A-1-Urwin-Con_SLD GSE5724 Plant gene expression associated with susceptibility to nematodes
46.0 99.8 GSM184933 Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 1 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 7e-2 38 At1g79360 844274 ATOCT2 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 2) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:ion transport;C:integral to membrane, membrane;BMFPOA C.G. S.X.
0.03 3e-1 36 At5g14000 831248 anac084 (Arabidopsis NAC domain containing protein 84) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.01 1e+0 34 At4g11270 826729 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:cytosol;MFBOP C.G. S.X.
0.02 1e+0 34 At4g24460 828548 unknown protein F:unknown;P:unknown;C:chloroplast;OPBM C.G. S.X.
0.01 1e+0 34 At4g17610 827480 tRNA/rRNA methyltransferase (SpoU) family protein F:RNA binding, RNA methyltransferase activity;P:RNA processing;C:endomembrane system;BOMPFA C.G. S.X.
0.02 1e+0 34 At3g28150 822439 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 1e+0 34 At1g08260 837346 TIL1 (TILTED 1) Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells. C.G. S.X.
0.01 4e+0 32 At5g13400 831181 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMOF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e+0 32 Glycine max GmaAffx.55917.2.A1_at AW350642 - - 3e+0 At3g58550 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.04 5e-1 34 Hordeum vulgare EBes01_SQ003_E20_at EBes01_SQ003_E20 - - 8e-1 At3g58550 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 2e+0 34 Oryza sativa Os11g0185750 9639.m00755 - - 1e+0 At5g13500 unknown protein C.G. S.X.
0.03 9e-2 38 Populus trichocarpa PtpAffx.135655.1.S1_at CX185864 - - 2e-11 At3g22270 unknown protein C.G. S.X.
0.04 7e-2 38 Triticum aestivum TaAffx.58783.1.S1_at CA615931 - - 6e-2 At3g58550 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.04 5e+0 30 Vitis vinifera 1622307_at CF413911 - - 2e+0 At5g16110 unknown protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.11685.1.A1_at BM379931 hypothetical protein LOC100194378 - 3e-1 At1g72645 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006869 The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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