Gene omics information

Query gene ID At3g58520
Gene name ubiquitin thiolesterase
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4050.8At3g58520825021ubiquitin thiolesteraseF:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:intracellular;PS.X.H.G.
0.3133.8At4g30700829193pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFS.X.H.G.
0.2930.3At2g13600815845pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFS.X.H.G.
0.1912.7At1g20230838612pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBS.X.H.G.
0.114.1At1g66520842970pde194 (pigment defective 194)F:hydroxymethyl-, formyl- and related transferase activity, formyltetrahydrofolate deformylase activity, catalytic activity;P:purine ribonucleotide biosynthetic process, biosynthetic process;C:unknown;BOMFPAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
390.2100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
158.399.9GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
73.699.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
64.299.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.899.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
55.799.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.999.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.599.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.499.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
48.799.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-138At2g35770818149scpl28 (serine carboxypeptidase-like 28)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBC.G.S.X.
0.012e-138At1g55040841947zinc finger (Ran-binding) family proteinF:binding, zinc ion binding;P:unknown;C:nucleus;MBOPFVAC.G.S.X.
0.026e-136At5g55510835645P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporterF:protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein transport;C:mitochondrial inner membrane presequence translocase complex, chloroplast envelope;MFPOC.G.S.X.
0.016e-136At5g44330834458male sterility MS5 family proteinF:binding;P:biological_process unknown;C:unknown;POBAC.G.S.X.
0.026e-136At3g58120824981BZIP61Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP34. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.C.G.S.X.
0.016e-136At1g67110843031CYP735A2member of CYP709AC.G.S.X.
0.016e-136At1g28240839718unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBAFMVC.G.S.X.
0.013e+034At5g45810834621CIPK19 (CBL-INTERACTING PROTEIN KINASE 19)Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.5), which has also been reported as a member of the CBL-interacting protein kinases (CIPK19).C.G.S.X.
0.023e+034At5g66230836755unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.022e-138Glycine maxGmaAffx.82582.1.S1_atBM139949--6e-3At2g16385unknown proteinC.G.S.X.
0.025e+032Hordeum vulgarebaak36d21_atbaak36d21--2e+0At3g12470nucleic acid bindingC.G.S.X.
0.068e-240Oryza sativaOs04g0546100AK122016.1-Plant specific of unknown function DUF860 familyprotein6e-2At3g58520ubiquitin thiolesteraseC.G.S.X.
0.284e-1893Populus trichocarpaPtpAffx.206462.1.S1_atpmrna12816hypothetical protein-3e-18At3g58520ubiquitin thiolesteraseC.G.S.X.
0.027e-136Triticum aestivumTaAffx.112407.1.S1_atCA624147--3e-1At5g45130RHA1 (RAB HOMOLOG 1)C.G.S.X.
0.023e+032Vitis vinifera1618990_atCF513182hypothetical protein LOC100243216-2e-1At5g62880ARAC10C.G.S.X.
0.024e+032Zea maysZm.3620.1.S1_atAW076176--5e+0At5g28610-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006511The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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