Gene omics information

Query gene ID At3g58160
Gene name XIJ
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6176.7At3g58160824985XIJClass XI myosin gene expressed in flowers from 4-6 week old plants and leaves from 3 week old plantsS.X.H.G.
0.6781.6At2g23660816897LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10)F:unknown;P:biological_process unknown;C:unknown;PMBOFS.X.H.G.
0.6781.6At4g02900828143early-responsive to dehydration protein-related / ERD protein-relatedF:unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMOBS.X.H.G.
0.6075.7At1g18750838457AGL65 (AGAMOUS-LIKE 65)Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.S.X.H.G.
0.4457.2At1g04760839424ATVAMP726member of Synaptobrevin -like protein familyS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
90.599.9GSM142739DH001_ATH1_A6-TCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
82.299.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
69.899.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
67.999.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
63.699.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.799.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.899.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
58.799.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
58.599.8GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
57.499.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.153e-33145At4g28710828991XIHmember of Myosin-like proteinsC.G.S.X.
0.194e-32141At1g54560841898XIEmember of Myosin-like proteinsC.G.S.X.
0.122e-31139At2g31900817748XIFEncodes an novel myosin isoform.C.G.S.X.
0.122e-28129At5g43900834412MYA2 (ARABIDOPSIS MYOSIN 2)Encodes a member of the type XI myosin protein family that binds F-actin and co-localizes with actin filaments and peroxisomes. Homozygous mutants are reported to have pleiotropic effects in growth and fertility and may also be lethal. This protein is also involved in root hair growth and organelle trafficking. This protein interacts with RabC2a and RabD1 in a GTP-dependent manner.C.G.S.X.
0.133e-27125At1g08730837394XICClass XI myosin geneC.G.S.X.
0.181e-26123At5g20490832171XIKEncodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant.C.G.S.X.
0.133e-24115At1g17580838333MYA1 (MYOSIN 1)Encodes a member of the type XI myosin protein family involved in organelle trafficking and overall plant development.C.G.S.X.
0.094e-20101At2g33240817886XIDmember of Myosin-like proteinsC.G.S.X.
0.066e-1997At1g04600839480XIA (MYOSIN XI A)member of Myosin-like proteinsC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e-863Glycine maxGmaAffx.6253.4.S1_atBI893603--4e-8At5g20490XIKC.G.S.X.
0.014e-344Hordeum vulgareContig20373_atContig20373--2e-9At4g28710XIHC.G.S.X.
0.179e-35151Oryza sativaOs06g0488200AK120774.1-Myosin4e-113At1g08730XICC.G.S.X.
0.292e-93345Populus trichocarpaPtpAffx.201676.1.S1_atpmrna3338hypothetical protein-3e-94At3g58160XIJC.G.S.X.
0.035e-757Triticum aestivumTa.853.2.S1_atBG909044--8e-1At4g07675unknown proteinC.G.S.X.
0.036e-1375Vitis vinifera1619609_atCB976068hypothetical protein LOC100256590-6e-62At5g43900MYA2 (ARABIDOPSIS MYOSIN 2)C.G.S.X.
0.102e-23111Zea maysZm.442.1.S1_atAF104924.2unconventional myosin heavy chain-5e-48At5g20490XIKC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0030048Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage