Gene omics information

Query gene ID At3g58140
Gene name phenylalanyl-tRNA synthetase class IIc family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6781.6At3g58140824983phenylalanyl-tRNA synthetase class IIc family proteinF:in 6 functions;P:tRNA processing, phenylalanyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, membrane;BOMFAPS.X.H.G.
0.6378.1At5g13120831151peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinF:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;OBMFPAVS.X.H.G.
0.6378.1At3g10670820236ATNAP7Plastidic SufC-like ATP-binding cassette/ATPase essential for Arabidopsis embryogenesis. Involved in the biogenesis and/or repair of oxidatively damaged FeS clusters. Expressed in embryos and meristems.S.X.H.G.
0.4457.2At5g19370832057rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing proteinF:isomerase activity;P:biological_process unknown;C:chloroplast;BOMFPAS.X.H.G.
0.4355.3At4g36390829791radical SAM domain-containing protein / TRAM domain-containing proteinF:iron-sulfur cluster binding, catalytic activity;P:biological_process unknown;C:chloroplast;OBMAPS.X.H.G.
0.3846.7At3g51140824278-F:unknown;P:biological_process unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BPOS.X.H.G.
0.3338.1At1g12410837797CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).S.X.H.G.
0.2930.3At2g21170816652TIM (TRIOSEPHOSPHATE ISOMERASE)Encodes triosephosphate isomerase.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
10.399.2GSM183512MYB76_OE_rep2GSE7570ATR1_like_Clade_OE_and_miR
7.998.9GSM318627Apex_BLS>>TCP4_14DAS_2GSE12691Knockdown and overexpression of CIN-TCP genes
7.998.9GSM318331EL_14DAS_2GSE12676Arabidopsis thaliana Ler developmental series
6.898.7GSM318330EL_14DAS_1GSE12676Arabidopsis thaliana Ler developmental series
6.298.6GSM183511MYB76_OE_rep1GSE7570ATR1_like_Clade_OE_and_miR
6.298.6E-ATMX-25-raw-cel-1441077420
6.298.6GSM133268RIKEN-GODA5B-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
6.098.5GSM184151ATR1_OE_rep2GSE7570ATR1_like_Clade_OE_and_miR
5.898.4GSM133276RIKEN-GODA9B-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
5.898.4GSM131498ATGE_5_AGSE5630AtGenExpress: Developmental series (leaves)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.022e-138At5g67430836879GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBAC.G.S.X.
0.016e-136At5g57130835819protein bindingF:protein binding;P:protein metabolic process;C:cellular_component unknown;PBOAMC.G.S.X.
0.026e-136At1g76770844011heat shock protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVAC.G.S.X.
0.016e-136At1g07725837287ATEXO70H6 (exocyst subunit EXO70 family protein H6)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.C.G.S.X.
0.026e-136At1g72890843620disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMOC.G.S.X.
0.013e+034At5g27970832867bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MFOPBC.G.S.X.
0.013e+034At5g02390830266unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.243e-1997Glycine maxGma.1742.1.A1_atBI967509--2e-19At3g58140phenylalanyl-tRNA synthetase class IIc family proteinC.G.S.X.
0.332e-2099Hordeum vulgareContig8405_atContig8405--7e-20At3g58140phenylalanyl-tRNA synthetase class IIc family proteinC.G.S.X.
0.284e-1997Oryza sativaOs.27772.2.S1_at---0C.G.S.X.
0.412e-75284Populus trichocarpaPtpAffx.132845.1.S1_atCN523811hypothetical protein-1e-75At3g58140phenylalanyl-tRNA synthetase class IIc family proteinC.G.S.X.
0.189e-25115Triticum aestivumTaAffx.102021.1.S1_atCA656613--7e-25At3g58140phenylalanyl-tRNA synthetase class IIc family proteinC.G.S.X.
0.153e-28125Vitis vinifera1620553_atCF211773hypothetical protein LOC100265994-4e-28At3g58140phenylalanyl-tRNA synthetase class IIc family proteinC.G.S.X.
0.259e-23107Zea maysZm.10591.1.S1_atBQ479053hypothetical protein LOC100194290-3e-22At3g58140phenylalanyl-tRNA synthetase class IIc family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006432The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
LGO:0006412The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
LGO:0006418The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
LGO:0008033The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00067Link to KaPPA-View 4tRNA-charging-pathway



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00970Link to KEGG PATHWAYAminoacyl-tRNA biosynthesis
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