CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g57940

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g57940 824963 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFAPV S.X. H.G.
0.71 84.2 At3g09720 820129 DEAD/DEAH box helicase, putative F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.69 82.9 At3g06530 819831 binding F:binding;P:unknown;C:chloroplast, vacuole;MFOPB S.X. H.G.
0.69 82.9 At4g05410 825889 transducin family protein / WD-40 repeat family protein F:nucleotide binding, nucleic acid binding;P:mitochondrial fission;C:nucleolus, small nucleolar ribonucleoprotein complex, anaphase-promoting complex, CUL4 RING ubiquitin ligase complex;MFOBPVA S.X. H.G.
0.65 79.6 At3g57660 824935 NRPA1 Encodes a subunit of RNA polymerase I (aka RNA polymerase A). S.X. H.G.
0.65 79.6 At3g21540 821708 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:rRNA processing;C:nucleolus, heterotrimeric G-protein complex;MFOPBA S.X. H.G.
0.61 76.7 At5g11240 830994 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:endomembrane system;BMFOPA S.X. H.G.
0.60 75.7 At2g40700 818665 DEAD/DEAH box helicase, putative (RH17) F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:unknown;BOMFPAV S.X. H.G.
0.57 73.8 At1g63810 842684 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPA S.X. H.G.
0.56 73.0 At3g15460 820785 brix domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
67.6 99.9 GSM133120 RIKEN-YAMAUCHI2B GSE5687 AtGenExpress: Different temperature treatment of seeds
48.9 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
33.9 99.7 E-MEXP-849-raw-cel-1181981030
33.5 99.7 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.3 99.7 E-MEXP-849-raw-cel-1181981006
31.8 99.7 E-MEXP-849-raw-cel-1181981046
31.5 99.7 GSM133307 RIKEN-NAKABAYASHI3A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
28.2 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
27.7 99.7 GSM133119 RIKEN-YAMAUCHI2A GSE5687 AtGenExpress: Different temperature treatment of seeds
27.2 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.81 0 2298 At1g10490 837589 unknown protein F:unknown;P:unknown;C:cellular_component unknown;BMOFAP C.G. S.X.
0.01 3e-2 42 At4g08350 826391 GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVA C.G. S.X.
0.01 1e-1 40 At3g09070 820060 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOPFBV C.G. S.X.
0.01 1e-1 40 At3g48050 823960 DNA binding / protein binding / transcription regulator F:protein binding, transcription regulator activity, DNA binding;P:transcription;C:nucleus;MOBFPVA C.G. S.X.
0.01 1e-1 40 At3g48060 823961 bromo-adjacent homology (BAH) domain-containing protein F:protein binding, transcription regulator activity, DNA binding;P:transcription;C:nucleus;MOBFPVA C.G. S.X.
0.01 4e-1 38 At3g09430 820101 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 4e-1 38 At3g27550 822377 group II intron splicing factor CRS1-related F:RNA binding;P:unknown;C:unknown;BMOFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-1 38 Glycine max Gma.14088.1.A1_at CD415327 - - 7e-1 At4g08869 - C.G. S.X.
0.01 5e-2 40 Hordeum vulgare Contig401_at Contig401 - - 2e+0 At5g09830 BolA-like family protein C.G. S.X.
0.12 2e-16 89 Oryza sativa Os12g0170700 AK058272.1 - Conserved hypothetical protein 8e-30 At1g10490 unknown protein C.G. S.X.
0.36 1e-72 276 Populus trichocarpa PtpAffx.207160.1.S1_at pmrna14209 hypothetical protein - 3e-54 At1g10490 unknown protein C.G. S.X.
0.03 2e+0 36 Triticum aestivum TaAffx.128564.1.S1_at CA657655 - - 7e-1 At1g10490 unknown protein C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1611053_at CF405013 - - 1e-15 At5g28540 BIP1 C.G. S.X.
0.01 7e-1 36 Zea mays Zm.12539.1.A1_at AI600548 - - 1e+0 At5g64460 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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