CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g57930

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.77 88.0 At3g57930 824962 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBV S.X. H.G.
0.83 91.4 At1g72440 843576 EDA25 (embryo sac development arrest 25) F:unknown;P:polar nucleus fusion;C:endomembrane system;BOMFPVA S.X. H.G.
0.81 90.4 At5g60030 836125 unknown protein F:unknown;P:unknown;C:unknown;MOFBPVA S.X. H.G.
0.80 89.8 At3g19650 821502 cyclin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV S.X. H.G.
0.74 86.1 At1g05460 837047 SDE3 (SILENCING DEFECTIVE) Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing. S.X. H.G.
0.73 85.5 At2g40650 818660 pre-mRNA splicing factor PRP38 family protein F:binding;P:RNA processing;C:cellular_component unknown;MBOFPVA S.X. H.G.
0.68 82.2 At5g16950 831558 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.68 82.2 At1g47970 841215 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA S.X. H.G.
0.67 81.6 At3g50690 824233 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.65 79.6 At3g02760 820930 ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding F:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAP S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
669.6 100.0 GSM284384 Arabidopsis GEP5 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
493.8 100.0 GSM284385 Arabidopsis GEP6 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
485.9 100.0 GSM311273 Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
485.2 100.0 GSM311274 Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
406.4 100.0 GSM311288 Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
388.9 100.0 GSM311287 Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
176.9 100.0 GSM284386 Arabidopsis GSUS3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
173.4 100.0 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
157.1 99.9 GSM284387 Arabidopsis GSUS4b GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
103.8 99.9 GSM284391 Arabidopsis GPE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.43 2e-17 89 At2g42190 818819 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA C.G. S.X.
0.02 5e-2 38 At1g80310 844371 sulfate transmembrane transporter F:sulfate transmembrane transporter activity;P:response to salt stress;C:vacuole;BOPFMA C.G. S.X.
0.01 2e-1 36 At1g51570 841582 C2 domain-containing protein F:unknown;P:tryptophan biosynthetic process;C:endoplasmic reticulum, cell wall;MPOF C.G. S.X.
0.01 8e-1 34 At5g45240 834560 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PMBOFA C.G. S.X.
0.02 8e-1 34 At5g19090 832028 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;MBOPFVA C.G. S.X.
0.02 8e-1 34 At5g27750 832837 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e+0 34 Glycine max GmaAffx.37678.1.S1_at BQ628402 - - 6e-1 At3g57930 unknown protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig8457_at Contig8457 - - 2e-5 At2g22080 unknown protein C.G. S.X.
0.04 1e-1 38 Oryza sativa OsAffx.3790.1.S1_at - - - 0 C.G. S.X.
0.04 3e-1 36 Populus trichocarpa PtpAffx.223460.1.S1_at pmrna41485 hypothetical protein - 7e-3 At3g27100 - C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.97757.1.A1_at CA722091 - - 4e+0 At3g57930 unknown protein C.G. S.X.
0.04 6e-2 36 Vitis vinifera 1606728_at CF209779 hypothetical protein LOC100262168 - 5e-1 At3g57930 unknown protein C.G. S.X.
0.04 6e+0 30 Zea mays ZmAffx.929.1.S1_at AI795460 - - 5e-2 At5g17900 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage