Gene omics information

Query gene ID At3g57920
Gene name SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g57920824961SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15)Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expression is regulated by MIR156b.S.X.H.G.
0.7788.0At2g42200818820SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9)Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expresssion is regulated by MIR156b.S.X.H.G.
0.6781.6At3g06160819790transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POS.X.H.G.
0.5570.6At2g42800818880AtRLP29 (Receptor Like Protein 29)F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFAS.X.H.G.
0.4457.2At4g30130829136unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMFS.X.H.G.
0.3846.7At1g10980837641-F:unknown;P:biological_process unknown;C:vacuole;MFPOS.X.H.G.
0.3338.1At1g27370839626squamosa promoter-binding protein-like 10 (SPL10)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
125.799.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
125.399.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
124.799.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
108.699.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
105.999.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
105.399.9GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
101.799.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
101.299.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
101.199.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
97.099.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.338e-37155At2g42200818820SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9)Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expresssion is regulated by MIR156b.C.G.S.X.
0.029e-961At1g20980838692SPL14 (squamosa promoter binding protein-like 14)Encodes a nuclear plant-specific protein with features characteristic of a transcriptional regulator, including a nuclear localization signal sequence, a plant-specific DNA binding domain (the SBP box), and a protein interaction motif (ankyrin repeats). It unctions as a transcriptional regulator that plays a role not only in sensitivity to FB1, but also in the development of normal plant architecture.C.G.S.X.
0.054e-550At5g50670835138squamosa promoter-binding protein, putativeF:DNA binding;P:biological_process unknown;C:nucleus;PMC.G.S.X.
0.054e-550At5g50570835126squamosa promoter-binding protein, putativeF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMC.G.S.X.
0.066e-446At2g33810817948SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.C.G.S.X.
0.052e-344At5g43270834345SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2)member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. The genes are characterized by the presence of the SBP-box, which encodes a protein domain, theC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.033e-344Glycine maxGma.17501.1.S1_atBG650023--8e-4At3g57920SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15)C.G.S.X.
0.022e-240Hordeum vulgareContig11980_atContig11980--3e-2At3g57920SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15)C.G.S.X.
0.037e-550Oryza sativaOs08g0509600AK107191.1-SBP-domain protein 5 (Fragment)2e-4At2g42200SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9)C.G.S.X.
0.051e-552Populus trichocarpaPtpAffx.213302.1.S1_atpmrna26020hypothetical protein-4e-11At2g42200SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9)C.G.S.X.
0.026e-136Triticum aestivumTa.5891.2.S1_a_atCA618619--4e+0At3g22570protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.033e-342Vitis vinifera1620576_atCD800420hypothetical protein LOC100246757-7e-5At1g27370squamosa promoter-binding protein-like 10 (SPL10)C.G.S.X.
0.042e-550Zea maysZm.240.1.S1_atAJ011619.1SBP-domain protein 6-5e-5At2g42200SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0008361Any process that modulates the size of a cell.
XGO:0042127Any process that modulates the frequency, rate or extent of cell proliferation.
XGO:0010228The process involved in transforming a meristem that produces vegetative structures, such as leaves, into a meristem that produces reproductive structures, such as a flower or an inflorescence.
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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