Gene omics information

Query gene ID At3g57900
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g57900824959unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9597.0At5g14560831307unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8693.1At2g40440818638BTB/POZ domain-containing proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.8089.8At2g01500814678PFS2 (PRETTY FEW SEEDS 2)PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.S.X.H.G.
0.7888.6At4g02970828121AT7SL-1 (Arabidopsis 7SL RNA 1)Signal recognition particle. Type 4 of RNA polymerase III dependent genes.S.X.H.G.
0.7687.4At4g25510828655unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7083.5At5g66370836769unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFS.X.H.G.
0.6579.6At1g52430841674ubiquitin carboxyl-terminal hydrolase-relatedF:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;POBMFS.X.H.G.
0.6176.7At1g11690837713unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVS.X.H.G.
0.5873.8At3g28280822454-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
396.0100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
345.7100.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
332.1100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
323.1100.0GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
307.1100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
288.8100.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
279.5100.0GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
274.2100.0GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
269.3100.0GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
269.3100.0GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.266e-650At2g42210818821mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinHomologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family.C.G.S.X.
0.026e-340At4g27110828819COBL11 (COBRA-LIKE PROTEIN 11 PRECURSOR)F:unknown;P:biological_process unknown;C:anchored to membrane;PC.G.S.X.
0.024e-134At2g35710818140glycogenin glucosyltransferase (glycogenin)-relatedF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process, biosynthetic process;C:endomembrane system;PMFOBVC.G.S.X.
0.014e-134At1g14740838039unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PMOBFAC.G.S.X.
0.012e+032At5g58450835958bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MFOPBC.G.S.X.
0.022e+032At5g66540836786-F:molecular_function unknown;P:rRNA processing;C:cytosol, nucleolus, nucleus;MOFBPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.055e-134Glycine maxGmaAffx.14735.1.S1_atBQ079975--8e-1At3g57900unknown proteinC.G.S.X.
0.072e-134Hordeum vulgareHVSMEf0019P22f_atHVSMEf0019P22f--5e-1At3g57900unknown proteinC.G.S.X.
0.037e-134Oryza sativaOs11g0113300BX898462-Conserved hypothetical protein5e-1At4g20470unknown proteinC.G.S.X.
0.045e-134Populus trichocarpaPtpAffx.205038.1.S1_atpmrna9976hypothetical protein-5e-3At5g42780AtHB27 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27)C.G.S.X.
0.066e+030Triticum aestivumTaAffx.80040.1.S1_atCA703735--9e-1At2g25840OVA4 (ovule abortion 4)C.G.S.X.
0.054e-132Vitis vinifera1610490_atCB340186--4e+0At3g57900unknown proteinC.G.S.X.
0.053e+030Zea maysZm.9317.1.A1_atBM341145--4e+0At3g43740leucine-rich repeat family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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