CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g57780

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g57780 824947 - F:unknown;P:unknown;C:unknown;OMFBPVA S.X. H.G.
0.30 32.1 At2g45150 819123 phosphatidate cytidylyltransferase family protein F:phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups;P:phospholipid biosynthetic process;C:membrane;BOMFP S.X. H.G.
0.29 30.3 At1g27680 839660 APL2 (ADPGLC-PPASE LARGE SUBUNIT) ADP-glucose pyrophosphorylase catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions. S.X. H.G.
0.29 30.3 At5g28290 832912 ATNEK3 (NIMA-RELATED KINASE3) Encodes AtNek3, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes. S.X. H.G.
0.26 24.4 At3g10140 820177 RECA3 (recA homolog 3) F:nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding;P:DNA repair, SOS response, DNA recombination, DNA metabolic process;C:mitochondrion;BOAFMPV S.X. H.G.
0.23 19.3 At2g31530 817711 EMB2289 (EMBRYO DEFECTIVE 2289) F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:embryonic development ending in seed dormancy, protein secretion;C:chloroplast, membrane;OBPAM S.X. H.G.
0.22 17.5 At1g11820 837730 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PO S.X. H.G.
0.22 17.5 At5g39940 833991 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPAF S.X. H.G.
0.21 15.8 At3g17970 819660 atToc64-III (Arabidopsis thaliana translocon at the outer membrane of chloroplasts 64-III) F:binding, carbon-nitrogen ligase activity, with glutamine as amido-N-donor;P:unknown;C:chloroplast;BOMFPA S.X. H.G.
0.21 15.8 At1g63850 842688 PRLI-interacting factor-related F:protein binding;P:biological_process unknown;C:unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
73.5 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
59.0 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
55.2 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
54.3 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.7 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
53.5 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.7 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.4 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
48.4 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.1 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.44 4e-65 250 At2g42320 818833 nucleolar protein gar2-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA C.G. S.X.
0.05 2e-8 61 At5g06930 830584 - F:unknown;P:unknown;C:chloroplast;OMBFPVA C.G. S.X.
0.02 4e-3 44 At3g01810 821073 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;OMFBPA C.G. S.X.
0.04 2e-2 42 At5g43230 834341 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOB C.G. S.X.
0.01 2e-2 42 At2g06210 815177 ELF8 (EARLY FLOWERING 8) Encodes a yeast CTR9 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast CTR9 is a component of a five-member PAF1 complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin. C.G. S.X.
0.02 2e-2 42 At2g22080 816743 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:nucleus;MBOFPVA C.G. S.X.
0.01 6e-2 40 At2g45900 819198 unknown protein F:molecular_function unknown;P:response to gibberellin stimulus;C:cellular_component unknown;POMFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-2 40 Glycine max GmaAffx.33627.1.S1_at BU926573 - - 3e-3 At3g50550 unknown protein C.G. S.X.
0.03 5e-4 46 Hordeum vulgare Contig19475_at Contig19475 - - 2e-9 At2g42320 nucleolar protein gar2-related C.G. S.X.
0.05 1e-7 59 Oryza sativa Os09g0487200 AK070460.1 - Conserved hypothetical protein 3e-8 At2g42320 nucleolar protein gar2-related C.G. S.X.
0.13 2e-11 71 Populus trichocarpa PtpAffx.16901.1.S1_at CX660057 hypothetical protein - 1e-11 At3g57780 - C.G. S.X.
0.02 3e-1 38 Triticum aestivum TaAffx.119495.1.S1_at CA600709 - - 2e-2 At5g04910 unknown protein C.G. S.X.
0.06 1e-9 63 Vitis vinifera 1618244_s_at CF404277 hypothetical protein LOC100253823 - 1e-9 At3g57780 - C.G. S.X.
0.01 2e-3 44 Zea mays Zm.16505.3.A1_at CF019822 - - 0 At5g56030 HSP81-2 (HEAT SHOCK PROTEIN 81-2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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