CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g57430

Gene name pentatricopeptide (PPR) repeat-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g57430 824910 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POFMB S.X. H.G.
0.52 67.4 At1g71460 843487 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF S.X. H.G.
0.50 65.3 At5g50280 835093 EMB1006 (embryo defective 1006) F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POMFBA S.X. H.G.
0.45 58.3 At5g48830 834941 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO S.X. H.G.
0.40 50.8 At3g02660 821282 emb2768 (EMBRYO DEFECTIVE 2768) F:RNA binding, tyrosine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBFMPA S.X. H.G.
0.39 48.4 At4g21190 827867 emb1417 (embryo defective 1417) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;POMB S.X. H.G.
0.37 45.0 At2g26930 817234 ATCDPMEK (4-(CYTIDINE 5'-PHOSPHO)-2-C-METHYL-D-ERITHRITOL KINASE) Encodes a 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase. S.X. H.G.
0.37 45.0 At1g06820 837193 CRTISO (CAROTENOID ISOMERASE) Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS, CRTiso is required to complete the synthesis of lycopene from phytoene. S.X. H.G.
0.35 41.6 At2g04360 814975 unknown protein F:molecular_function unknown;P:unknown;C:chloroplast;BPO S.X. H.G.
0.33 38.1 At1g31500 840040 endonuclease/exonuclease/phosphatase family protein F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MFOPB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
114.8 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
36.4 99.7 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
29.7 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
28.7 99.7 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.7 99.6 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
22.6 99.6 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.1 99.6 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.5 99.6 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
21.2 99.6 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.6 99.6 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 9e-5 50 At3g14330 820653 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POMF C.G. S.X.
0.03 5e-3 44 At3g26782 5008030 - F:unknown;P:unknown;C:mitochondrion;POMFB C.G. S.X.
0.01 2e-2 42 At5g62760 836397 nuclear protein ZAP-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOVBA C.G. S.X.
0.03 2e-2 42 At1g68930 843226 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA C.G. S.X.
0.02 9e-2 40 At5g46460 834689 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:mitochondrion;POMF C.G. S.X.
0.02 9e-2 40 At4g16835 827390 pentatricopeptide (PPR) repeat-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;POFMBA C.G. S.X.
0.01 9e-2 40 At4g30700 829193 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF C.G. S.X.
0.01 9e-2 40 At3g05170 819681 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;BFOPMA C.G. S.X.
0.01 9e-2 40 At3g63370 825512 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:unknown;POFM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-2 42 Glycine max GmaAffx.18291.1.A1_at BU548908 - - 3e-1 At2g29930 F-box family protein C.G. S.X.
0.02 2e-4 48 Hordeum vulgare Contig20543_at Contig20543 - - 9e-2 At3g03580 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.02 7e-1 38 Oryza sativa OsAffx.6932.1.S1_at - - - 0 C.G. S.X.
0.37 6e-16 87 Populus trichocarpa PtpAffx.200297.1.S1_at pmrna589 hypothetical protein - 4e-16 At3g57430 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 4e-1 38 Triticum aestivum TaAffx.108845.2.S1_at CA683385 - - 1e-3 At2g19770 PRF5 (PROFILIN5) C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1614786_at BQ792554 - - 7e-8 At4g33170 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 4e-2 40 Zea mays Zm.12727.1.S1_at CD997307 - - 2e-6 At2g15690 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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