Gene omics information

Query gene ID At3g57230
Gene name AGL16 (AGAMOUS-LIKE 16)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g57230824890AGL16 (AGAMOUS-LIKE 16)MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes.S.X.H.G.
0.5267.4At1g34120840311IP5PI (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I)Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not act on I(1)P, I(1,4)P2, or phosphatidylinositol(4,5)P2.S.X.H.G.
0.4659.8At5g10790830946UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22)Encodes a ubiquitin-specific protease.S.X.H.G.
0.4558.3At2g01980814729SOS1 (SALT OVERLY SENSITIVE 1)Encodes a plasma membrane-localized Na+/H+ antiporter SOS1. Functions in the extrusion of toxic Na+ from cells and is essential for plant salt tolerance. Has 12 predicted transmembrane domains in the N-terminal region and a long cytoplasmic tail of approx. 700 aa at the C-terminal side. SOS1 interacts through its predicted cytoplasmic tail with RCD1, a regulator of oxidative-stress responses, suggesting that SOS1 might function in oxidative-stress tolerance.S.X.H.G.
0.4457.2At1g47310841134unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.4253.9At5g05700830454ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1)Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence.S.X.H.G.
0.4253.9At1g49710841394FUT12 (FUCOSYLTRANSFERASE 12)Encodes a protein with core α1,3-fucosyltransferase activity.S.X.H.G.
0.4152.4At5g61580836279PFK4 (PHOSPHOFRUCTOKINASE 4)F:6-phosphofructokinase activity;P:glycolysis;C:6-phosphofructokinase complex, chloroplast;BOMPFAVS.X.H.G.
0.4152.4At5g43100834326aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;MPFOS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
45.899.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
19.899.6GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.
16.999.5GSM260883Yap_A2-AMF_Rep2GSE10323Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
16.699.5GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
15.699.5GSM260882Yap_A1-AMF_Rep2GSE10323Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
15.099.4GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.187e-1581At4g37940829950AGL21encodes a MADS box protein, highly expressed in the root.C.G.S.X.
0.104e-1375At3g57390824906AGL18encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos.C.G.S.X.
0.164e-756At2g14210815907AGL44 (AGAMOUS-LIKE 44)MADS box gene, transcription factorC.G.S.X.
0.096e-652At4g24540828556AGL24 (AGAMOUS-LIKE 24)Encodes a MADS-box protein involved in flowering. Regulates the expression of SOC1 and is also upregulated by SOC1. Binds with IMK3 kinase domain. Phosphorylated by IMK3; likely to be a target for IMK3 kinase domain.C.G.S.X.
0.052e-550At5g60910836212AGL8 (agamous-like 8)MADS box gene negatively regulated by APETALA1C.G.S.X.
0.072e-550At2g22630816794AGL17 (agamous-like 17)Encodes a MADs domain containing protein involved in promoting flowering. Loss of function mutations show delayed flowering in long days and reduced levels of LFY and AP1 expression.C.G.S.X.
0.054e-446At5g15800831436SEP1 (SEPALLATA1)Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3.C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.091e-448Glycine maxGma.11362.1.S1_atAW395011--1e-4At3g57230AGL16 (AGAMOUS-LIKE 16)C.G.S.X.
0.052e-136Hordeum vulgareContig2198_atContig2198--3e-6At1g24260SEP3 (SEPALLATA3)C.G.S.X.
0.278e-756Oryza sativaOs08g0431900AY345220.1-Transcription factor MADS236e-6At3g57230AGL16 (AGAMOUS-LIKE 16)C.G.S.X.
0.434e-26119Populus trichocarpaPtpAffx.201979.1.S1_atpmrna3951hypothetical protein-3e-26At3g57230AGL16 (AGAMOUS-LIKE 16)C.G.S.X.
0.072e-240Triticum aestivumTaAffx.143995.17.A1_atAY188331--1e-3At5g60910AGL8 (agamous-like 8)C.G.S.X.
0.041e-446Vitis vinifera1609046_atCB971729hypothetical protein LOC100256085-1e-13At2g45650AGL6 (AGAMOUS-LIKE 6)C.G.S.X.
0.141e-1789Zea maysZm.524.1.S1_atAF112149.1MADS box protein 2-6e-17At3g57230AGL16 (AGAMOUS-LIKE 16)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010440The process by which an unspecialized epidermal cell progresses through a series of divisions that culminate in the production of a stomatal complex.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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