CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g57160

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.32 35.7 At3g57160 824883 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.61 76.7 At5g24316 832501 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBFO S.X. H.G.
0.46 59.8 At3g10780 820247 emp24/gp25L/p24 family protein F:protein transmembrane transporter activity;P:intracellular protein transport, transport;C:endomembrane system, integral to membrane, membrane;MFPO S.X. H.G.
0.46 59.8 At4g00160 828180 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.42 53.9 At4g11400 826744 ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein / Myb-like DNA-binding domain-containing protein F:DNA binding;P:unknown;C:vacuole;PMF S.X. H.G.
0.33 38.1 At2g32340 817795 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMAOP S.X. H.G.
0.25 22.6 At1g64940 842802 CYP89A6 member of CYP89A S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
441.1 100.0 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
439.9 100.0 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
341.6 100.0 GSM311292 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
329.1 100.0 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
316.7 100.0 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
236.3 100.0 GSM311280 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
236.0 100.0 GSM311275 Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
211.2 100.0 GSM311279 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
206.5 100.0 GSM284389 Arabidopsis GMPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
164.3 99.9 GSM311276 Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.42 8e-13 73 At2g41420 818740 proline-rich family protein F:unknown;P:G-protein coupled receptor protein signaling pathway;C:plasma membrane;MPOFBVA C.G. S.X.
0.27 2e-4 46 At5g67600 836896 unknown protein F:unknown;P:unknown;C:plasma membrane;MOPFBV C.G. S.X.
0.02 4e-2 38 At5g38820 833873 amino acid transporter family protein Encodes a putative amino acid transporter. C.G. S.X.
0.01 4e-2 38 At4g01210 828040 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:cellular_component unknown;OBPA C.G. S.X.
0.06 4e-2 38 At1g31750 840062 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVA C.G. S.X.
0.03 2e-1 36 At5g63470 836466 NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO C.G. S.X.
0.02 2e-1 36 At4g15410 827210 PUX5 (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma) F:protein binding;P:biological_process unknown;C:cellular_component unknown;OMFPBV C.G. S.X.
0.02 2e-1 36 At2g02070 814738 AtIDD5 (Arabidopsis thaliana Indeterminate(ID)-Domain 5) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;MOFPBAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 6e-2 38 Glycine max GmaAffx.60743.1.S1_at BU091720 - - 6e-2 At3g57160 unknown protein C.G. S.X.
0.05 8e-2 36 Hordeum vulgare Contig21455_at Contig21455 - - 1e-11 At3g10090 40S ribosomal protein S28 (RPS28A) C.G. S.X.
0.06 9e-5 48 Oryza sativa Os01g0948600 AK103603.1 - Conserved hypothetical protein 2e-3 At5g04080 unknown protein C.G. S.X.
0.17 1e-3 44 Populus trichocarpa Ptp.1230.1.S1_at CF227747 - - 4e-10 At2g41420 proline-rich family protein C.G. S.X.
0.05 4e-2 38 Triticum aestivum Ta.14231.1.S1_x_at CA604109 - - 8e-2 At3g57160 unknown protein C.G. S.X.
0.20 3e-6 50 Vitis vinifera 1613847_s_at CB971599 hypothetical protein LOC100256616 - 2e-5 At3g57160 unknown protein C.G. S.X.
0.06 1e+0 32 Zea mays ZmAffx.888.1.A1_at AI770836 - - 9e-3 At5g66350 SHI (SHORT INTERNODES) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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