Gene omics information

Query gene ID At3g57140
Gene name patatin-related
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.9496.7At3g57140824881patatin-relatedF:GTP binding;P:metabolic process, lipid metabolic process;C:cellular_component unknown;BFOPMS.X.H.G.
0.6982.9At3g06830819867pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOAMS.X.H.G.
0.6781.6At5g01700831695protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFVBS.X.H.G.
0.6781.6At3g54240824591hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:biological_process unknown;C:endomembrane system;BPOFAMS.X.H.G.
0.6680.1At4g38230829980CPK26member of Calcium Dependent Protein KinaseS.X.H.G.
0.6579.6At2g18180816331SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putativeF:transporter activity;P:transport;C:unknown;MPFOS.X.H.G.
0.6579.6At2g25600817099SPIK (Shaker Pollen Inward K+ channel)mutant has Impaired pollen-tube growth; member of Shaker K+ channel family, also Stelar K+ outward rectifying channel (SKOR) familyS.X.H.G.
0.6579.6At1g79860844325ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12)Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth Growth.S.X.H.G.
0.6478.9At3g13065820494SRF4 (STRUBBELIG-RECEPTOR FAMILY 4)F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAS.X.H.G.
0.6478.9At5g25340832606unknown proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;MPOS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
236.0100.0GSM154504Arabidopsis desiccated mature pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
177.6100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
155.799.9GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
130.599.9GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.333e-38161At5g04040830283SDP1 (SUGAR-DEPENDENT1)Encodes a triacylglycerol lipase that is involved in storage lipid breakdown during seed germination. The mutant plant exhibits a much slower rate of postgerminative growth than the wild type.C.G.S.X.
0.013e-138At2g40860818684protein kinase family protein / protein phosphatase 2C ( PP2C) family proteinF:protein serine/threonine kinase activity, protein serine/threonine phosphatase activity, protein kinase activity, catalytic activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAC.G.S.X.
0.011e+036At3g04020819557unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.011e+036At2g38880818472NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance.C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.052e-346Glycine maxGmaAffx.86013.1.S1_atBF595565--6e-14At5g04040SDP1 (SUGAR-DEPENDENT1)C.G.S.X.
0.022e+034Hordeum vulgareHS08M08u_s_atHS08M08u--1e+0At1g52580ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)C.G.S.X.
0.121e-863Oryza sativaOs01g0762000AK120818.1-Patatin family protein1e-17At5g04040SDP1 (SUGAR-DEPENDENT1)C.G.S.X.
0.391e-87325Populus trichocarpaPtpAffx.213271.1.S1_atpmrna25958hypothetical protein-2e-76At5g04040SDP1 (SUGAR-DEPENDENT1)C.G.S.X.
0.021e+036Triticum aestivumTaAffx.4261.1.S1_atCA746921--4e+0At4g03180unknown proteinC.G.S.X.
0.011e+034Vitis vinifera1609257_atCD801635hypothetical protein LOC100251924-9e-5At1g74458unknown proteinC.G.S.X.
0.025e-446Zea maysZm.4256.1.S1_atCA403577--3e-6At5g04040SDP1 (SUGAR-DEPENDENT1)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006629The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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