CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g57140

Gene name patatin-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.94 96.7 At3g57140 824881 patatin-related F:GTP binding;P:metabolic process, lipid metabolic process;C:cellular_component unknown;BFOPM S.X. H.G.
0.69 82.9 At3g06830 819867 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOAM S.X. H.G.
0.67 81.6 At5g01700 831695 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFVB S.X. H.G.
0.67 81.6 At3g54240 824591 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:biological_process unknown;C:endomembrane system;BPOFAM S.X. H.G.
0.66 80.1 At4g38230 829980 CPK26 member of Calcium Dependent Protein Kinase S.X. H.G.
0.65 79.6 At2g18180 816331 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative F:transporter activity;P:transport;C:unknown;MPFO S.X. H.G.
0.65 79.6 At2g25600 817099 SPIK (Shaker Pollen Inward K+ channel) mutant has Impaired pollen-tube growth; member of Shaker K+ channel family, also Stelar K+ outward rectifying channel (SKOR) family S.X. H.G.
0.65 79.6 At1g79860 844325 ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12) Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth Growth. S.X. H.G.
0.64 78.9 At3g13065 820494 SRF4 (STRUBBELIG-RECEPTOR FAMILY 4) F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.64 78.9 At5g25340 832606 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;MPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
260.4 100.0 E-MEXP-1138-raw-cel-1432773162
236.0 100.0 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
205.7 100.0 E-MEXP-1138-raw-cel-1432773194
197.0 100.0 E-MEXP-1138-raw-cel-1432773226
182.4 100.0 E-MEXP-1138-raw-cel-1432773354
177.6 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
155.7 99.9 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
140.7 99.9 E-MEXP-1138-raw-cel-1432772682
137.0 99.9 E-MEXP-1138-raw-cel-1432773386
130.5 99.9 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.33 3e-38 161 At5g04040 830283 SDP1 (SUGAR-DEPENDENT1) Encodes a triacylglycerol lipase that is involved in storage lipid breakdown during seed germination. The mutant plant exhibits a much slower rate of postgerminative growth than the wild type. C.G. S.X.
0.01 3e-1 38 At2g40860 818684 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein F:protein serine/threonine kinase activity, protein serine/threonine phosphatase activity, protein kinase activity, catalytic activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 1e+0 36 At3g04020 819557 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 1e+0 36 At2g38880 818472 NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1) Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-3 46 Glycine max GmaAffx.86013.1.S1_at BF595565 - - 6e-14 At5g04040 SDP1 (SUGAR-DEPENDENT1) C.G. S.X.
0.02 2e+0 34 Hordeum vulgare HS08M08u_s_at HS08M08u - - 1e+0 At1g52580 ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5) C.G. S.X.
0.12 1e-8 63 Oryza sativa Os01g0762000 AK120818.1 - Patatin family protein 1e-17 At5g04040 SDP1 (SUGAR-DEPENDENT1) C.G. S.X.
0.39 1e-87 325 Populus trichocarpa PtpAffx.213271.1.S1_at pmrna25958 hypothetical protein - 2e-76 At5g04040 SDP1 (SUGAR-DEPENDENT1) C.G. S.X.
0.02 1e+0 36 Triticum aestivum TaAffx.4261.1.S1_at CA746921 - - 4e+0 At4g03180 unknown protein C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1609257_at CD801635 hypothetical protein LOC100251924 - 9e-5 At1g74458 unknown protein C.G. S.X.
0.02 5e-4 46 Zea mays Zm.4256.1.S1_at CA403577 - - 3e-6 At5g04040 SDP1 (SUGAR-DEPENDENT1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006629 The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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