CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g56400

Gene name WRKY70

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At3g56400 824807 WRKY70 member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of JA-signaling is partly executed by NPR1. S.X. H.G.
0.64 78.9 At5g60900 836211 RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1) Encodes a receptor-like protein kinase. S.X. H.G.
0.61 76.7 At2g14560 815943 LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA) Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5. S.X. H.G.
0.57 73.8 At5g54610 835550 ANK (ankyrin) Induced in response to Salicylic acid. Belongs to the ankyrin repeat protein family. S.X. H.G.
0.50 65.3 At2g40750 818670 WRKY54 member of WRKY Transcription Factor; Group III S.X. H.G.
0.47 61.2 At2g46430 819251 ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3) cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistance S.X. H.G.
0.44 57.2 At4g23130 828412 CRK5 (CYSTEINE-RICH RLK5) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) S.X. H.G.
0.43 55.3 At2g37710 818348 RLK (receptor lectin kinase) Induced in response to Salicylic acid. S.X. H.G.
0.42 53.9 At3g04210 819576 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBMO S.X. H.G.
0.42 53.9 At1g21270 838723 WAK2 cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
29.7 99.7 GSM244448 Arabidopsis wild-type_6 h_ Xanthomonas inoculated_biological rep1_exp1 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
29.1 99.7 GSM244455 Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
27.3 99.7 E-MEXP-807-raw-cel-1173273060
26.3 99.7 E-MEXP-807-raw-cel-1173273196
25.0 99.6 GSM134404 St.Clair_1-101_324_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5755 Expression Level Polymorphism Project (ELP) - Tsu-1
23.6 99.6 E-MEXP-807-raw-cel-1173273170
23.2 99.6 E-MEXP-807-raw-cel-1173273032
23.1 99.6 GSM134403 St.Clair_1-100_268b_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5755 Expression Level Polymorphism Project (ELP) - Tsu-1
23.1 99.6 E-MEXP-807-raw-cel-1173273088
22.8 99.6 E-MEXP-546-raw-cel-863289586
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.20 1e-35 151 At2g40750 818670 WRKY54 member of WRKY Transcription Factor; Group III C.G. S.X.
0.03 7e-3 42 At1g80590 844398 WRKY66 member of WRKY Transcription Factor; Group III C.G. S.X.
0.03 3e-2 40 At1g66600 842978 WRKY63 member of WRKY Transcription Factor; Group III C.G. S.X.
0.02 3e-2 40 At1g66560 842974 WRKY64 member of WRKY Transcription Factor; Group III C.G. S.X.
0.02 3e-2 40 At1g66550 842973 WRKY67 member of WRKY Transcription Factor; Group III C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e-6 54 Glycine max Gma.4281.1.S1_at AW156348 transcription factor - 2e-6 At3g56400 WRKY70 C.G. S.X.
0.04 2e-1 36 Hordeum vulgare Contig19274_at Contig19274 - - 4e+0 At5g09230 SRT2 (SIRTUIN 2) C.G. S.X.
0.03 6e-2 40 Oryza sativa Os12g0182100 9640.m00748 - - 3e-2 At4g14540 NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3) C.G. S.X.
0.11 3e-6 54 Populus trichocarpa PtpAffx.211278.1.S1_at pmrna22121 hypothetical protein - 2e-6 At3g56400 WRKY70 C.G. S.X.
0.04 7e-3 42 Triticum aestivum TaAffx.107125.1.S1_s_at CA705627 - - 2e-1 At3g42310 unknown protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1619424_at BQ800205 hypothetical protein LOC100267695 - 5e-9 At4g23550 WRKY29 C.G. S.X.
0.02 3e+0 32 Zea mays Zm.17495.1.A1_at AI979723 hypothetical protein LOC100279885 - 1e+0 At3g29780 RALFL27 (ralf-like 27) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010200 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
X GO:0031347 Any process that modulates the frequency, rate or extent of a defense response.
X GO:0050832 Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
X GO:0042742 Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
X GO:0009753 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.
X GO:0009862 The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance.
X GO:0009864 The series of molecular signals mediated by jasmonic acid involved in induced systemic resistance.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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