Gene omics information

Query gene ID At3g56350
Gene name superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g56350824802superoxide dismutase (Mn), putative / manganese superoxide dismutase, putativeF:superoxide dismutase activity, metal ion binding;P:superoxide metabolic process, removal of superoxide radicals;C:mitochondrion, endomembrane system;BOFMPAVS.X.H.G.
0.8592.4At5g57550835859XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)xyloglucan endotransglycosylase-related protein (XTR3)S.X.H.G.
0.8592.4At4g10020826593AtHSD5 (hydroxysteroid dehydrogenase 5)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAVS.X.H.G.
0.8290.9At2g33520817917-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFS.X.H.G.
0.8190.4At5g45690834608unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPFS.X.H.G.
0.8190.4At5g22470832308NAD+ ADP-ribosyltransferaseF:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBVS.X.H.G.
0.7989.1At5g01670831701aldose reductase, putativeF:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPAS.X.H.G.
0.7888.6At3g05260819690short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVS.X.H.G.
0.7888.6At4g09600826545GASA3 (GAST1 PROTEIN HOMOLOG 3)One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato.S.X.H.G.
0.7788.0At3g50980824262XERO1 (DEHYDRIN XERO 1)F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
403.3100.0GSM10456WT Post-Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
354.1100.0GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
347.1100.0GSM10454WT Post-Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
340.9100.0GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)
314.4100.0GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
276.2100.0GSM131701ATGE_82_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
254.1100.0GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
244.0100.0GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
240.6100.0GSM131704ATGE_83_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.201e-344At3g10920820263MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)manganese superoxide dismutase (MSD1)C.G.S.X.
0.014e-136At5g15170831369tyrosyl-DNA phosphodiesterase-relatedF:phosphoric diester hydrolase activity;P:DNA repair;C:nucleus;MFOPC.G.S.X.
0.014e-136At2g26610817202-F:molecular_function unknown;P:unknown;C:chloroplast;MOPC.G.S.X.
0.011e+034At4g02510827934TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159)An integral membrane GTPase that functions as a transit-sequence receptor required for the import of proteins necessary for chloroplast biogenesis. Located in the outer chloroplast membrane.C.G.S.X.
0.011e+034At2g27010817243CYP705A9member of CYP705AC.G.S.X.
0.031e+034At1g48720841294unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.011e+034At1g24560839070unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.291e-1791Glycine maxGma.5576.1.S1_atCD417924MnSOD-7e-16At3g10920MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)C.G.S.X.
0.173e-961Hordeum vulgareContig374_atContig374--1e-8At3g56350superoxide dismutase (Mn), putative / manganese superoxide dismutase, putativeC.G.S.X.
0.131e-552Oryza sativaOs05g0323900AU173300-Manganese-superoxide dismutase precursor (EC1.15.1.1)3e-1At5g55560protein kinase family proteinC.G.S.X.
0.346e-1375Populus trichocarpaPtp.528.1.A1_atCV269199hypothetical protein-5e-13At3g56350superoxide dismutase (Mn), putative / manganese superoxide dismutase, putativeC.G.S.X.
0.171e-1067Triticum aestivumTa.1944.1.S1_atAF092524.1manganese superoxide dismutase-1e-10At3g56350superoxide dismutase (Mn), putative / manganese superoxide dismutase, putativeC.G.S.X.
0.093e-1167Vitis vinifera1617148_atCF204985.1--4e-41At3g10920MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)C.G.S.X.
0.181e-859Zea maysZm.1987.1.A1_a_atM33119.1superoxide dismutase3 /// Superoxide dismutase [Mn] 3.4, mitochondrial-1e-14At3g10920MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0019430Any process involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2).
LGO:0006801The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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