CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g56140

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g56140 824780 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid lumen, chloroplast;PBMOFV S.X. H.G.
0.44 57.2 At3g11560 820329 unknown protein F:unknown;P:unknown;C:chloroplast, chloroplast envelope;P S.X. H.G.
0.33 38.1 At4g33630 829504 EX1 (EXECUTER1) F:unknown;P:response to singlet oxygen;C:thylakoid membrane;MOPFBV S.X. H.G.
0.25 22.6 At1g07110 837221 F2KP (FRUCTOSE-2,6-BISPHOSPHATASE) Encodes the bifunctional enzyme fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase. S.X. H.G.
0.09 2.8 At5g50920 835165 CLPC1 Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.2 99.6 E-ATMX-35-raw-cel-1574334896
21.8 99.6 GSM269833 T8 leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
19.0 99.5 GSM269818 C2 leaf-well watered-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
15.4 99.5 GSM253196 RGA-GR-DEX-REP2 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
15.2 99.4 GSM269822 T6 leaf-well watered-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
14.9 99.4 GSM269832 T8 leaf-well watered-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
14.4 99.4 GSM269831 T6 leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
13.8 99.4 GSM77178 04h low CO2 + light replicate B GSE3423 Carbon fixation (endogenous sugar) and light-dependent gene expression
13.4 99.4 GSM253165 48h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
12.9 99.3 E-TABM-63-raw-cel-681137052
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.69 0 1602 At2g40400 818633 unknown protein F:unknown;P:unknown;C:chloroplast thylakoid lumen;PBOM C.G. S.X.
0.01 7e-2 40 At1g35710 840475 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 7e-2 40 At1g55090 841952 carbon-nitrogen hydrolase family protein F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, NAD+ synthase (glutamine-hydrolyzing) activity, ATP binding;P:nitrogen compound metabolic process, NAD biosynthetic process;C:cellular_component unknown;BOAMFP C.G. S.X.
0.01 3e-1 38 At4g24750 828577 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOA C.G. S.X.
0.01 3e-1 38 At3g49310 824093 - F:unknown;P:unknown;C:endomembrane system;BPMOFA C.G. S.X.
0.01 1e+0 36 At5g10160 830880 beta-hydroxyacyl-ACP dehydratase, putative F:hydro-lyase activity, 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity;P:fatty acid biosynthetic process;C:cell wall, chloroplast, membrane;BOPM C.G. S.X.
0.01 1e+0 36 At5g61240 836245 protein binding F:protein binding;P:signal transduction;C:Golgi apparatus;PMBOFA C.G. S.X.
0.01 1e+0 36 At4g24390 828541 F-box family protein (FBX14) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PMOF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 2e-67 258 Glycine max Gma.16660.1.S1_at BE821812 - - 7e-50 At2g40400 unknown protein C.G. S.X.
0.16 7e-16 85 Hordeum vulgare Contig5335_at Contig5335 - - 1e-15 At3g56140 unknown protein C.G. S.X.
0.14 2e-16 89 Oryza sativa Os01g0826900 AK105709.1 - Protein of unknown function DUF399 family protein 3e-32 At2g40400 unknown protein C.G. S.X.
0.41 2e-107 391 Populus trichocarpa PtpAffx.207790.1.S1_at pmrna15484 hypothetical protein - 2e-97 At3g56140 unknown protein C.G. S.X.
0.15 1e-9 65 Triticum aestivum TaAffx.83639.1.S1_at CA655029 - - 2e-8 At3g56140 unknown protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1613112_at CK138195.1 - - 2e+0 At3g56140 unknown protein C.G. S.X.
0.02 3e-2 40 Zea mays Zm.17743.1.S1_at CK370833 - - 2e+1 At3g42180 catalytic/ transferase, transferring glycosyl groups C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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