CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g56010

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g56010 824767 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;P S.X. H.G.
0.77 88.0 At3g55250 824691 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, chloroplast, nucleus;P S.X. H.G.
0.67 81.6 At3g51510 824314 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO S.X. H.G.
0.53 68.6 At4g13220 826938 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.52 67.4 At1g03680 839436 ATHM1 encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins. S.X. H.G.
0.52 67.4 At2g35410 818107 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:thylakoid, chloroplast stroma, chloroplast;MPFOBA S.X. H.G.
0.50 65.3 At2g48070 819419 RPH1 (RESISTANCE TO PHYTOPHTHORA 1) Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae. S.X. H.G.
0.50 65.3 At5g55710 835665 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBP S.X. H.G.
0.48 62.5 At1g20810 838672 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid lumen, chloroplast thylakoid lumen, chloroplast;BOPMF S.X. H.G.
0.47 61.2 At5g42765 834286 - F:unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.1 99.1 GSM268008 Col-0, Time 0, rep-A GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
7.4 98.8 E-MEXP-739-raw-cel-1099467366
7.3 98.8 GSM260957 A5-LLOYD-CON_REP2 GSE10326 Transcriptome analysis of pho3
7.3 98.8 GSM260879 A2-Greco-WT GSE10322 Higher order transcriptional regulation conferred by the bountiful gain of function mutant
6.4 98.6 GSM142871 GW001_ATH1_A16-Warre-2ca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
6.4 98.6 GSM142870 GW001_ATH1_A15-Warre-2ca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
6.3 98.6 GSM260958 A6-LLOYD-CON_REP3 GSE10326 Transcriptome analysis of pho3
6.3 98.6 E-TABM-52-raw-cel-1583683070
6.2 98.6 E-TABM-52-raw-cel-1583683038
6.1 98.5 GSM268010 Col-0, Time 0, rep-C GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 5e-3 42 At3g13380 820538 BRL3 (BRI1-LIKE 3) Similar to BRI, brassinosteroid receptor protein. C.G. S.X.
0.03 5e-3 42 At1g66620 842980 seven in absentia (SINA) protein, putative F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MOFPBVA C.G. S.X.
0.03 2e-2 40 At1g67540 843075 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 7e-2 38 At5g24050 832470 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P C.G. S.X.
0.01 7e-2 38 At3g19240 821458 - F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;FOPM C.G. S.X.
0.02 7e-2 38 At2g13770 815861 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO C.G. S.X.
0.01 3e-1 36 At5g28320 832916 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBAV C.G. S.X.
0.01 3e-1 36 At5g67470 836883 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:in 7 components;MPOFBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-1 36 Glycine max GmaAffx.62297.1.S1_at AW703709 - - 2e-1 At3g56010 unknown protein C.G. S.X.
0.04 2e-3 42 Hordeum vulgare bah36j17_s_at bah36j17 - - 3e-3 At3g56010 unknown protein C.G. S.X.
0.04 1e-1 38 Oryza sativa Os.9415.1.S1_at - - - 0 C.G. S.X.
0.04 4e-1 36 Populus trichocarpa PtpAffx.57928.2.S1_at BI120751 hypothetical protein - 1e+0 At3g52990 pyruvate kinase, putative C.G. S.X.
0.04 3e-1 36 Triticum aestivum Ta.15137.1.S1_at CA687054 - - 7e-1 At3g50980 XERO1 (DEHYDRIN XERO 1) C.G. S.X.
0.05 2e-5 48 Vitis vinifera 1609724_at CF210650 hypothetical protein LOC100255332 - 1e-4 At3g56010 unknown protein C.G. S.X.
0.04 1e-1 36 Zea mays ZmAffx.834.1.A1_at AI770566 - - 8e-1 At1g54420 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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