Gene omics information

Query gene ID At3g55940
Gene name phosphoinositide-specific phospholipase C, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4457.2At3g55940824760phosphoinositide-specific phospholipase C, putativeF:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:plasma membrane;MOFBPVS.X.H.G.
0.4050.8At4g17550827470transporter-relatedF:sugar:hydrogen symporter activity;P:carbohydrate transport;C:plasma membrane;BMFOPAS.X.H.G.
0.157.8At5g04250830304OTU-like cysteine protease family proteinF:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;MPOFVBS.X.H.G.
0.082.3At4g15130827179catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferaseF:choline-phosphate cytidylyltransferase activity, catalytic activity, nucleotidyltransferase activity;P:response to cold, biosynthetic process;C:unknown;OMBFPAS.X.H.G.
0.071.9At3g46930823846protein kinase family proteinF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
257.9100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
160.099.9GSM284389Arabidopsis GMPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
139.999.9GSM269821WT leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
131.299.9GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
110.999.9GSM269829WT leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
95.399.9GSM184922Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
87.499.9GSM269817T8 leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
85.699.9E-ATMX-35-raw-cel-1574334816
79.999.9GSM269825T8 leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
74.099.9GSM311292Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.723e-102373At3g08510819999ATPLC2 (PHOSPHOLIPASE C 2)Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol.C.G.S.X.
0.112e-1171At2g40116818602phosphoinositide-specific phospholipase C family proteinF:phospholipase C activity, phosphoinositide phospholipase C activity, phosphoric diester hydrolase activity;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:cellular_component unknown;MFOPC.G.S.X.
0.171e-965At5g58700835984phosphoinositide-specific phospholipase C family proteinF:phospholipase C activity, phosphoinositide phospholipase C activity, phosphoric diester hydrolase activity;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:plasma membrane;MFOPC.G.S.X.
0.052e-552At5g58670835981PLC1 (PHOSPHOLIPASE C 1)phosphatidylinositol-specific phospholipase C is induced to a significant extent under various environmental stresses, such as dehydration, salinity, and low temperature. May play a role in secondary ABA response. There are two genes called ATPLC1, one corresponding to AT4g38530 and one corresponding ot AT5g58670 (this one).C.G.S.X.
0.022e-448At5g58690835983phosphoinositide-specific phospholipase C family proteinF:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity, calcium ion binding;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:cellular_component unknown;MFOPC.G.S.X.
0.014e-344At5g39550833951VIM3 (VARIANT IN METHYLATION 3)Encodes the VIM3/ORTH1 protein that is similar to VIM1. This protein has an N-terminal PHD domain and two RING domains surrounding an SRA domain. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. This protein functions as an E3 ubiquitin ligase in vitro with members of the UBC8 family E2s. Either of the two RING domains present in the protein can promote ubiquitylation in vitro, but, not the PHD domain. Over-expression of ORTH1/VIM3 leads to decreased levels of FWA methylation, increased levels of FWA transcripts, and delayed flowering. Cen180 repeats are also hypomethylated in plants overexpressing this protein.C.G.S.X.
0.034e-344At4g38530830010ATPLC1 (ARABIDOPSIS THALIANA PHOSPHOLIPASE C 1)Encodes a putative phosphoinositide-specific phospholipase C. There are two genes called ATPLC1, one corresponding to AT4g38530 (this one) and one corresponding to AT5g58670.C.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.202e-1481Glycine maxGma.6611.2.S1_atBE805015phosphatidylinositol-specific phospholipase C /// phosphoinositide-specific phospholipase C P13-4e-28At3g08510ATPLC2 (PHOSPHOLIPASE C 2)C.G.S.X.
0.022e+034Hordeum vulgareEBro08_SQ007_H23_atEBro08_SQ007_H23--8e-1At1g02450NIMIN1 (NIM1-INTERACTING 1)C.G.S.X.
0.067e-344Oryza sativaOsAffx.20000.1.S1_at---0C.G.S.X.
0.302e-24115Populus trichocarpaPtpAffx.207753.1.S1_atpmrna15429hypothetical protein-6e-33At3g08510ATPLC2 (PHOSPHOLIPASE C 2)C.G.S.X.
0.029e-136Triticum aestivumTa.5286.1.S1_atBJ280150--3e+0At3g20850proline-rich family proteinC.G.S.X.
0.221e-30133Vitis vinifera1607756_s_atCF519234hypothetical protein LOC100241574-3e-40At3g08510ATPLC2 (PHOSPHOLIPASE C 2)C.G.S.X.
0.051e-138Zea maysZm.4416.1.S1_atAY536525.1phospholipase C-5e-3At5g58700phosphoinositide-specific phospholipase C family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0007165The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
LGO:0006629The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
LGO:0007242A series of reactions within the cell that occur as a result of a single trigger reaction or compound.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00226Link to KaPPA-View 4Phosphatidyl inositol metabolism



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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