CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g55910

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g55910 824757 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.22 17.5 At1g52080 841637 AR791 unknown function S.X. H.G.
0.07 1.9 At2g31960 817755 ATGSL03 (GLUCAN SYNTHASE-LIKE 3) encodes a protein similar to callose synthase S.X. H.G.
0.05 1.1 At1g59820 842275 ALA3 (Aminophospholipid ATPase3) Encodes a phospholipid translocase. Involved in secretory vesicle formation from trans-Golgi in peripheral columella cells at the root tip. Mutants have short primary roots and grow slower. S.X. H.G.
0.02 0.4 At3g26100 822208 regulator of chromosome condensation (RCC1) family protein F:Ran GTPase binding;P:biological_process unknown;C:unknown;MOBPFAV S.X. H.G.
0.00 0.0 At1g27170 839606 ATP binding / protein binding / transmembrane receptor F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:chloroplast;PMBOFAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
106.5 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
105.3 99.9 GSM269821 WT leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
83.2 99.9 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
64.3 99.8 GSM269829 WT leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
63.8 99.8 GSM269827 C2 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
61.5 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
60.3 99.8 GSM269823 T6 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
58.5 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.8 99.8 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
46.2 99.8 GSM131458 AtGen_6-9822_Heatstress(3h)+1hrecovery-Roots-4.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-1 36 At2g43020 818904 ATPAO2 (Polyamine oxidase 2) F:electron carrier activity, amine oxidase activity, oxidoreductase activity;P:unknown;C:cellular_component unknown;BMOPFA C.G. S.X.
0.01 5e-1 34 At2g20000 816519 HBT (HOBBIT) Required for cell division and cell differentiation in meristems. Encodes a homolog of the CDC27 subunit of the anaphase-promoting complex (APC). Unlike other CDC27 homologs in Arabidopsis, its transcription is cell cycle regulated. Strong hbt mutants give rise to seedlings that lack an anatomically recognizable quiescent center and differentiated columella root cap cells, the cell types derived from the wild-type hypophysis. Furthermore, they have no mitotically active root meristem and lack a differentiated lateral root cap. C.G. S.X.
0.02 5e-1 34 At1g55120 841955 ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5) Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity. C.G. S.X.
0.07 2e+0 32 At3g26742 6241077 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.02 2e+0 32 At3g26820 822297 esterase/lipase/thioesterase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity;P:biological_process unknown;C:unknown;BPOMF C.G. S.X.
0.02 2e+0 32 At3g26840 822299 esterase/lipase/thioesterase family protein F:catalytic activity, acyltransferase activity;P:metabolic process;C:plastoglobule;BPMO C.G. S.X.
0.03 8e+0 30 At5g66300 836762 NAC105 (NAC DOMAIN CONTAINING PROTEIN 105) Encodes a NAC-domain transcription factor. Expressed in the vascular tissue. C.G. S.X.
0.03 8e+0 30 At5g52380 835314 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFVOP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e+0 32 Glycine max GmaAffx.41744.1.S1_at BM270174 - - 3e+0 At3g55910 unknown protein C.G. S.X.
0.04 1e+0 32 Hordeum vulgare HU12J04u_at HU12J04u - - 1e+0 At3g10915 reticulon family protein C.G. S.X.
0.04 4e+0 32 Oryza sativa OsAffx.7495.1.S1_at - - - 0 C.G. S.X.
0.06 3e+0 32 Populus trichocarpa PtpAffx.221446.1.S1_at pmrna38341 - - 2e+0 At3g55910 unknown protein C.G. S.X.
0.05 6e-1 34 Triticum aestivum Ta.8405.1.A1_at BQ161848 - - 1e+0 At3g55910 unknown protein C.G. S.X.
0.04 3e+0 30 Vitis vinifera 1618952_at CF405185 - - 7e-1 At4g18890 brassinosteroid signalling positive regulator-related C.G. S.X.
0.06 4e+0 30 Zea mays Zm.18267.1.A1_at AY222838.1 - - 2e+0 At5g59845 gibberellin-regulated family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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