Gene omics information

Query gene ID At3g55790
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5974.7At3g55790824745unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPBOFVS.X.H.G.
0.4457.2At2g28960817445leucine-rich repeat protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.4253.9At2g42060818806CHP-rich zinc finger protein, putativeF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMS.X.H.G.
0.3846.7At3g51350824298aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBAVS.X.H.G.
0.3846.7At5g59680836089leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAS.X.H.G.
0.3745.0At3g24290822017AMT1F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPAS.X.H.G.
0.3439.8At4g14630827113GLP9 (GERMIN-LIKE PROTEIN 9)germin-like protein with N-terminal signal sequence that may target it to the vacuole, plasma membrane and/or outside the cell.S.X.H.G.
0.3338.1At5g43520834372DC1 domain-containing proteinF:unknown;P:unknown;C:unknown;POMFS.X.H.G.
0.3133.8At1g26240839165proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVAS.X.H.G.
0.2522.6At4g04990825841unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
426.7100.0GSM291124root - 21% oxygen - 48h - FGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
235.0100.0E-MEXP-828-raw-cel-1156922342
223.0100.0E-MEXP-1112-raw-cel-1590665533
215.4100.0GSM128703Heinekamp_1-12_cs-root_Rep3_ATH1GSE5522Low chronic exposure of Arabidopsis thaliana to Caesium-137
158.499.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
155.899.9GSM128699Heinekamp_1-8_cs-root_Rep2_ATH1GSE5522Low chronic exposure of Arabidopsis thaliana to Caesium-137
134.199.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
128.699.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
126.499.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
118.799.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.046e-444At3g19320821466leucine-rich repeat family proteinF:protein binding;P:unknown;C:endomembrane system;PMOBFVAC.G.S.X.
0.062e-342At2g360266241209-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.051e-240At5g46730834716glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAC.G.S.X.
0.031e-240At3g51290824292proline-rich family proteinF:unknown;P:N-terminal protein myristoylation;C:unknown;MPOBFVAC.G.S.X.
0.021e-240At2g27100817252SE (SERRATE)Identified as a leaf form mutant by Redei having serrated leaves. Further analysis of the single loss of function allele indicated pleiotropic effects extending to many aspects of shoot development such as taller meristems, alterations in phase transition, phyllotaxy and branching. Encodes a single zinc finger containing protein that is expressed in meristems and organ primordia.C.G.S.X.
0.114e-238At4g33660829507unknown proteinF:unknown;P:unknown;C:unknown;MPOFBVAC.G.S.X.
0.044e-238At2g43630818965-F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, nucleus, chloroplast envelope;PMBVOC.G.S.X.
0.034e-238At1g20220838610nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:plant-type cell wall;MBOPFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.091e-240Glycine maxGmaAffx.15275.1.A1_atBU761115--1e-2At3g55790unknown proteinC.G.S.X.
0.047e-236Hordeum vulgareContig4435_atContig4435--2e-3At1g62510protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.065e-652Oryza sativaOsAffx.3259.1.S1_at---0C.G.S.X.
0.101e-240Populus trichocarpaPtpAffx.207398.1.S1_atpmrna14680hypothetical protein-2e-2At3g45160unknown proteinC.G.S.X.
0.072e-136Triticum aestivumTa.16013.1.S1_atCA595031--3e+0At5g65410HB25 (HOMEOBOX PROTEIN 25)C.G.S.X.
0.052e-134Vitis vinifera1616828_s_atCD799685similar to Os03g0670700-1e+0At4g38680GRP2 (GLYCINE RICH PROTEIN 2)C.G.S.X.
0.056e-236Zea maysZm.13317.1.S1_atCA827898hypothetical protein LOC100277679-2e-1At3g55790unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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