Gene omics information

Query gene ID At3g55770
Gene name LIM domain-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6176.7At3g55770824743LIM domain-containing proteinF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPFS.X.H.G.
0.7083.5At5g65430836668GRF8 (GENERAL REGULATORY FACTOR 8)member of 14-3-3 proteins. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1S.X.H.G.
0.5368.6At1g14400838002UBC1 (UBIQUITIN CARRIER PROTEIN 1)ubiquitin carrier proteinS.X.H.G.
0.5065.3At5g10450830909GRF6 (G-box regulating factor 6)Encodes a member of the 14-3-3 gene family that is a lambda isoform (14-3-3λ). Interacts with APX3 (ascorbate peroxidase) and AKR2 , suggesting a role in mediating oxidative metabolism in stress response. This protein was shown to colocalize and interact with SERK1 by which it is phosphorylated. This protein is also reported to interact with the phosphorylated form of the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1.S.X.H.G.
0.4761.2At2g20120816531COV1 (CONTINUOUS VASCULAR RING)Encodes an integral membrane protein of unknown function, highly conserved between plants and bacteria; is likely to be involved in a mechanism that negatively regulates the differentiation of vascular tissue in the stem. Mutants display a dramatic increase in vascular tissue development in the stem in place of the interfascicular region that normally separates the vascular bundles.S.X.H.G.
0.4659.8At2g28370817385-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PS.X.H.G.
0.4355.3At3g11530820326vacuolar protein sorting 55 family protein / VPS55 family proteinF:transporter activity;P:transport;C:vacuole;FMPOS.X.H.G.
0.4355.3At1g16240838193SYP51 (SYNTAXIN OF PLANTS 51)Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.S.X.H.G.
0.3846.7At2g45980819206unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.3338.1At1g76920844027F-box family protein (FBX3)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
19.799.6E-MEXP-1112-raw-cel-1590665325
16.099.5E-MEXP-1112-raw-cel-1590665741
15.599.5E-MEXP-1112-raw-cel-1590665273
12.599.3E-MEXP-1112-raw-cel-1590665689
10.399.2GSM290758root - 01% oxygen - 48h - AGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
10.399.2GSM245918wild type dark replicate 3GSE9728COP9 signalosome (csn) mutant analysis
9.799.1GSM245917wild type dark replicate 2GSE9728COP9 signalosome (csn) mutant analysis
9.599.1GSM245916wild type dark replicate 1GSE9728COP9 signalosome (csn) mutant analysis
9.399.1GSM25316648h into an extended nightCGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
9.299.1E-MEXP-1112-raw-cel-1590665429
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.771e-102373At2g39900818577LIM domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFC.G.S.X.
0.075e-652At1g01780839267LIM domain-containing proteinF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFC.G.S.X.
0.052e-240At2g45800819188LIM domain-containing proteinF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPFC.G.S.X.
0.011e+034At5g10560830921glycosyl hydrolase family 3 proteinF:xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:plasma membrane, vacuole;BOFPAMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.334e-29129Glycine maxGma.3563.2.S1_a_atBG362899--3e-29At3g55770LIM domain-containing proteinC.G.S.X.
0.245e-23107Hordeum vulgareContig3618_atContig3618--2e-22At3g55770LIM domain-containing proteinC.G.S.X.
0.201e-1171Oryza sativaOs03g0266100AK058507.1-Zn-binding protein, LIM domain containing protein9e-12At3g55770LIM domain-containing proteinC.G.S.X.
0.397e-43174Populus trichocarpaPtp.5414.1.S1_atCV248354hypothetical protein-3e-21At2g39900LIM domain-containing proteinC.G.S.X.
0.327e-24111Triticum aestivumTaAffx.58377.1.S1_atCA620108--5e-24At3g55770LIM domain-containing proteinC.G.S.X.
0.468e-64242Vitis vinifera1611183_atBQ798578hypothetical protein LOC100263273-6e-63At3g55770LIM domain-containing proteinC.G.S.X.
0.222e-22105Zea maysZm.6444.1.S1_atAY103686.1pollen-specific protein SF3-8e-22At3g55770LIM domain-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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