Gene omics information

Query gene ID At3g55730
Gene name MYB109 (myb domain protein 109)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g55730824739MYB109 (myb domain protein 109)putative transcription factor MYB109 (MYB109) mRNA,S.X.H.G.
0.3338.1At2g47350819348PAPA-1-like family protein / zinc finger (HIT type) family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAS.X.H.G.
0.3133.8At4g17895827513UBP20 (UBIQUITIN-SPECIFIC PROTEASE 20)Encodes a ubiquitin-specific protease.S.X.H.G.
0.2830.3At1g68920843225basic helix-loop-helix (bHLH) family proteinF:transcription factor activity;P:regulation of transcription;C:nucleus;PMOBFVAS.X.H.G.
0.2624.4At1g24460839062unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVS.X.H.G.
0.2624.4At3g61800825353-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPBFAVS.X.H.G.
0.2522.6At5g65290836654LMBR1 integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;MOFPS.X.H.G.
0.2420.7At2g27480817293calcium ion bindingF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOS.X.H.G.
0.2319.3At3g61570825330GDAP1 (GRIP-RELATED ARF-BINDING DOMAIN-CONTAINING ARABIDOPSIS PROTEIN 1)This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC3 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (161 aa) portion of the protein.S.X.H.G.
0.2319.3At4g11800826786hydrolase/ protein serine/threonine phosphataseF:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:endoplasmic reticulum;BPOS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
78.799.9GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
78.799.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
78.599.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
72.499.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
63.199.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
59.399.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.499.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.299.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.699.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
50.899.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.292e-44180At2g39880818575MYB25 (myb domain protein 25)Encodes a putative transcription factor (MYB25).C.G.S.X.
0.134e-1169At3g09230820079AtMYB1 (myb domain protein 1)member of MYB3R- and R2R3- type MYB- encoding genesC.G.S.X.
0.052e-757At4g18770827611MYB98 (myb domain protein 98)MYB98 is a member of the R2R3-MYB gene family, the members of which likely encode transcription factors. Within an ovule, MYB98 is expressed exclusively in the synergid cells, and mutations in this gene affect the female gametophyte specifically. myb98 female gametophytes are affected in two unique features of the synergid cell, pollen tube guidance and the filiform apparatus, but are otherwise normal. This suggests that MYB98 controls the development of specific features within the synergid cell during female gametophyte development. MYB98 also is expressed in trichomes and endosperm. Homozygous myb98 mutants exhibit no sporophytic defects, including trichome and endosperm defects.C.G.S.X.
0.076e-756At2g23290816861AtMYB70 (myb domain protein 70)Member of the R2R3 factor gene family.C.G.S.X.
0.072e-654At4g37260829880MYB73 (MYB DOMAIN PROTEIN 73)Member of the R2R3 factor gene family.C.G.S.X.
0.051e-552At3g50060824168MYB77Encodes a member of the R2R3 transcription factor gene family. Expressed in response to potassium deprivation and auxin. Involved in lateral root development. Interacts with ARF7 and regulates the expression of some auxin responsive genes.C.G.S.X.
0.032e-448At3g10040820165transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVAC.G.S.X.
0.032e-448At1g22640838870MYB3 (MYB DOMAIN PROTEIN 3)MYB-type transcription factor (MYB3) that represses phenylpropanoid biosynthesis gene expressionC.G.S.X.
0.036e-446At1g73410843676MYB54 (MYB DOMAIN PROTEIN 54)Encodes a putative transcription factor that is a member of the R2R3-MYB family.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.065e-240Glycine maxGmaAffx.74733.1.S1_atCA785073--3e-7At3g09230AtMYB1 (myb domain protein 1)C.G.S.X.
0.027e-238Hordeum vulgareEBro02_SQ006_H19_atEBro02_SQ006_H19--5e-5At2g35960NHL12C.G.S.X.
0.022e-552Oryza sativaOs05g0556800AK109887.1-Protein of unknown function DUF250 domaincontaining protein7e-1At1g07890APX1 (ascorbate peroxidase 1)C.G.S.X.
0.257e-26119Populus trichocarpaPtpAffx.209304.1.S1_atpmrna18390hypothetical protein-1e-26At3g55730MYB109 (myb domain protein 109)C.G.S.X.
0.031e-242Triticum aestivumTaAffx.5773.1.S1_atCA699192--2e-1At5g28040transcription regulatorC.G.S.X.
0.037e-134Vitis vinifera1616828_s_atCD799685similar to Os03g0670700-1e+0At4g38680GRP2 (GLYCINE RICH PROTEIN 2)C.G.S.X.
0.043e-136Zea maysZmAffx.999.1.S1_atAI881222hypothetical protein LOC100279401-5e-2At4g0081060S acidic ribosomal protein P1 (RPP1B)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009723A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus.
XGO:0009651A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
XGO:0009733A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
XGO:0009737A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
XGO:0009739A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus.
XGO:0009751A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus.
XGO:0009753A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage