Gene omics information

Query gene ID At3g55560
Gene name AGF2 (AT-hook protein of GA feedback 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g55560824721AGF2 (AT-hook protein of GA feedback 2)F:unknown;P:biological_process unknown;C:chloroplast;PMBOFS.X.H.G.
0.4050.8At3g09880820146ATB' BETAEncodes B' regulatory subunit of PP2A (AtB'beta).S.X.H.G.
0.2522.6At3g11540820327SPY (SPINDLY)Encodes a N-acetyl glucosamine transferase that may glycosylate other molecules involved in GA signaling. Contains a tetratricopeptide repeat region, and a novel carboxy-terminal region. SPY acts as both a repressor of GA responses and as a positive regulation of cytokinin signalling. SPY may be involved in reducing ROS accumulation in response to stress.S.X.H.G.
0.2522.6At5g66730836806zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFBS.X.H.G.
0.1811.4At4g05420825890DDB1A (DAMAGED DNA BINDING PROTEIN 1A)Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis.S.X.H.G.
0.135.8At1g49850841408zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBS.X.H.G.
0.051.1At3g07565819946DNA bindingF:DNA binding;P:biological_process unknown;C:chloroplast;PMOS.X.H.G.
0.020.4At4g26720828779PPX1 (PROTEIN PHOSPHATASE X 1)Encodes catalytic subunit of protein phosphatase X. Expressed at very low levels in A. thaliana flowers, leaves, stems and roots.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
40.899.8GSM142643MC002_ATH1_A7.3-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
38.699.8GSM142642MC002_ATH1_A7.2-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
38.599.8GSM142641MC002_ATH1_A7.1-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
32.999.7GSM142624MC002_ATH1_A1.2-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
32.499.7GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibition
28.299.7GSM142646MC002_ATH1_A8.3-dubos-aihGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
27.899.7GSM142649MC002_ATH1_A9.3-dubos-aahGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
27.499.7GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
26.999.7GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibition
25.999.7GSM142634MC002_ATH1_A4.3-dubos-6kcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.075e-446At3g04570819613DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:unknown;BPMOFVAC.G.S.X.
0.062e-344At3g60870825258DNA-binding protein-relatedF:unknown;P:unknown;C:unknown;PBC.G.S.X.
0.023e-240At1g06070837116bZIP transcription factor, putative (bZIP69)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;OMFPBVAC.G.S.X.
0.011e-138At5g61560836277protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation, protein ubiquitination;C:chloroplast, plasma membrane;MPOBFVAC.G.S.X.
0.021e-138At4g15410827210PUX5 (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma)F:protein binding;P:biological_process unknown;C:cellular_component unknown;OMFPBVC.G.S.X.
0.021e-138At4g15960827279catalytic/ epoxide hydrolaseF:epoxide hydrolase activity, catalytic activity;P:biological_process unknown;C:mitochondrion;BOMFPAC.G.S.X.
0.061e-138At2g42940818895DNA-binding family proteinF:DNA binding;P:biological_process unknown;C:chloroplast;PBOC.G.S.X.
0.021e-138At2g18350816350AtHB24 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 24)F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PC.G.S.X.
0.015e-136At4g12310826840CYP706A5member of CYP706AC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.043e+034Glycine maxPsAffx.psHA003iE02r_s_atPsAffx.psHA003iE02r--7e-5At4g14465DNA-binding protein-relatedC.G.S.X.
0.032e-136Hordeum vulgareHVSMEb0009A03r2_s_atHVSMEb0009A03r2--1e+1At3g49305-C.G.S.X.
0.039e-136Oryza sativaOs.39684.2.S1_x_at---0C.G.S.X.
0.117e-1065Populus trichocarpaPtpAffx.209324.1.S1_atpmrna18438hypothetical protein-3e-10At3g55560AGF2 (AT-hook protein of GA feedback 2)C.G.S.X.
0.035e-136Triticum aestivumTaAffx.107742.1.S1_atCA696088--2e-2At1g10420-C.G.S.X.
0.022e+032Vitis vinifera1613695_atCA815439hypothetical LOC100241660-1e-3At1g11610CYP71A18C.G.S.X.
0.023e+032Zea maysZm.4038.1.A1_atAI737071hypothetical protein LOC100274123-9e-5At1g75230HhH-GPD base excision DNA repair family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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