Gene omics information

Query gene ID At3g55500
Gene name ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6176.7At3g55500824715ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.S.X.H.G.
0.6277.3At1g78530844189protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.5974.7At1g69230843254SP1L2 (SPIRAL1-LIKE2)SPIRAL1-LIKE2 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root and organ growth as a result of defective anisotropic cell expansion.S.X.H.G.
0.5773.8At2g46070819215MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12)Encodes a MAP kinase protein. MPK12 interacts with the IBR5 protein phosphatase in vitro and in vivo, and it can be dephosphorylated and inactivated by IBR5. MPK12 appears to be a negative regulator of auxin signlaing. MPK12 RNAi lines are hypersensitive to auxin in root elongation and transcriptional response assays, but they appear to have normal sensitivity to ABA. MPK12 is a nuclear protein and its kinase activity is increased following auxin treatment. MPK12 transcripts are widely expressed in seedlings, but MPK12 expression is stronger in guard cells than in other cell types in mature plants.S.X.H.G.
0.5267.4At3g17070820964peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMS.X.H.G.
0.5267.4At5g65590836685Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:chloroplast;POFS.X.H.G.
0.5166.3At2g20875816621EPF1 (EPIDERMAL PATTERNING FACTOR 1)F:molecular_function unknown;P:stomatal complex patterning;C:unknown;PS.X.H.G.
0.5166.3At2g38300818410DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMFS.X.H.G.
0.5065.3At4g18290827555KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2)One of the four members of the Shaker family encoding guard cell potassium inward channels. Critical to stomatal opening induced by blue light. Critical to circadian rhythm of stomatal opening. Involved in plant development in response to high light intensity. Under high light intensity, the mutant plant produced less biomass compared to the wild type.S.X.H.G.
0.4659.8At4g17970827522unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BPOFS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
2018.4100.0E-MEXP-1443-raw-cel-1581869573
905.4100.0E-MEXP-1443-raw-cel-1581869803
670.0100.0E-MEXP-1443-raw-cel-1581869515
105.999.9E-MEXP-1443-raw-cel-1581869745
59.999.8GSM131296AtGen_6-2412_Osmoticstress-Shoots-6.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
58.999.8GSM131295AtGen_6-2411_Osmoticstress-Shoots-6.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
44.699.8GSM131299AtGen_6-2511_Osmoticstress-Shoots-12.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
34.399.7E-MEXP-475-raw-cel-680982521
32.799.7GSM131300AtGen_6-2512_Osmoticstress-Shoots-12.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
25.299.6GSM170911abh1 +ABA repl1GSE7112Abscisic acid effect on wild type and the abh1 mutant
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.723e-119428At2g39700818553ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.C.G.S.X.
0.338e-24111At2g28950817444ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6)Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.C.G.S.X.
0.135e-1685At1g26770839218ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.C.G.S.X.
0.282e-1583At2g37640818341EXP3member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.C.G.S.X.
0.182e-1583At1g69530843288ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.411e-26121Glycine maxGmaAffx.93176.1.S1_s_atCF808901expansin-2e-24At2g28950ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6)C.G.S.X.
0.185e-1167Hordeum vulgareContig3675_atContig3675--2e-10At3g55500ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)C.G.S.X.
0.258e-756Oryza sativaOs05g0477600U85246.1-Alpha-expansin OsEXPA42e-16At1g69530ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)C.G.S.X.
0.381e-41171Populus trichocarpaPtpAffx.24775.2.A1_x_atCV272777hypothetical protein-1e-41At2g39700ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)C.G.S.X.
0.195e-1995Triticum aestivumTa.5046.1.S1_atAY543535.1expansin EXPA9-3e-24At2g37640EXP3C.G.S.X.
0.349e-1579Vitis vinifera1608191_atCD798831hypothetical protein LOC100245911-4e-20At2g39700ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)C.G.S.X.
0.283e-1581Zea maysZm.13728.2.S1_atAY106266.1--1e-14At3g55500ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006949The formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane. Syncytia are normally derived from single cells that fuse or fail to complete cell division.
CGO:0009826The process by which a cell irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell.
CGO:0009828The series of events causing chemical and structural alterations of an existing cellulose and pectin-containing cell wall that results in greater extensibility of the wall. An example of this is found in Arabidopsis thaliana.
CGO:0009831The series of events that occur during cell growth that result in chemical or structural changes to existing cell walls of the type composed chiefly of cellulose and pectin. An example of this is found in Arabidopsis thaliana.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage