CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g55470

Gene name C2 domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.53 68.6 At3g55470 824713 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.46 59.8 At1g14370 837999 APK2A (PROTEIN KINASE 2A) Encodes protein kinase APK2a. S.X. H.G.
0.44 57.2 At4g35600 829712 CONNEXIN 32 plant-type connexin (gap junction-type protein), a component of plasmodesmata S.X. H.G.
0.44 57.2 At1g34750 840379 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:plasma membrane;PMOBFVA S.X. H.G.
0.43 55.3 At2g23320 816864 WRKY15 Encodes WRKY DNA-binding protein 15 (WRKY15). S.X. H.G.
0.43 55.3 At2g38290 818409 ATAMT2 (AMMONIUM TRANSPORTER 2) encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively. S.X. H.G.
0.41 52.4 At4g25030 828606 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBF S.X. H.G.
0.40 50.8 At5g18490 831967 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMBO S.X. H.G.
0.39 48.4 At3g11820 820355 SYP121 (SYNTAXIN OF PLANTS 121) Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance. S.X. H.G.
0.38 46.7 At3g19010 821434 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:flavonol synthase activity, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
60.8 99.8 GSM142837 MG001_ATH1_A16-Torres-6N1 GSE6176 Impact of Type III effectors on plant defense responses
50.1 99.8 E-MEXP-1443-raw-cel-1581869745
42.5 99.8 GSM131112 AtGen_B-40_3-5-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
42.2 99.8 E-MEXP-1094-raw-cel-1379507273
41.4 99.8 E-MEXP-1443-raw-cel-1581869515
40.9 99.8 E-MEXP-807-raw-cel-1173272948
39.0 99.8 GSM131139 AtGen_B-25_2-4-4_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
36.8 99.7 GSM142833 MG001_ATH1_A10-Torres-5N1 GSE6176 Impact of Type III effectors on plant defense responses
36.7 99.7 GSM142839 MG001_ATH1_A18-Torres-6N6 GSE6176 Impact of Type III effectors on plant defense responses
34.3 99.7 GSM142838 MG001_ATH1_A17-Torres-6N3 GSE6176 Impact of Type III effectors on plant defense responses
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 6e-2 38 At3g13228 820519 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFV C.G. S.X.
0.02 6e-2 38 At1g11620 837706 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.05 6e-2 38 At1g18770 838459 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV C.G. S.X.
0.01 2e-1 36 At1g68890 843222 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding Homologous to the four eubacterial men genes involved in menanoquinone biosynthesis. Studies of mutants defective in this gene demonstrated its involvement in phylloquinone biosynthesis in Arabidopsis. C.G. S.X.
0.02 9e-1 34 At3g56600 824827 inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor F:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:biological_process unknown;C:unknown;PMOFB C.G. S.X.
0.02 9e-1 34 At3g22770 821848 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 4e+0 32 At5g55300 835623 TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e+0 32 Glycine max PsAffx.C70000037_at PsAffx.C70000037 - - 2e+0 At3g45525 - C.G. S.X.
0.03 2e+0 32 Hordeum vulgare HD01C23w_at HD01C23w - - 1e+0 At3g15270 SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5) C.G. S.X.
0.02 5e-1 36 Oryza sativa Os10g0392900 9638.m02143 - Lipolytic enzyme, G-D-S-L family protein 1e-2 At1g28610 GDSL-motif lipase, putative C.G. S.X.
0.03 3e-1 36 Populus trichocarpa PtpAffx.142690.2.S1_s_at CX185710 hypothetical protein - 5e-34 At3g03340 UNE6 (unfertilized embryo sac 6) C.G. S.X.
0.04 2e-1 36 Triticum aestivum Ta.27788.2.S1_a_at CA717752 - - 3e-1 At3g55470 C2 domain-containing protein C.G. S.X.
0.04 7e-2 36 Vitis vinifera 1610204_at CF568819 - - 2e-1 At3g55470 C2 domain-containing protein C.G. S.X.
0.03 6e+0 30 Zea mays ZmAffx.1024.1.A1_at AI881614 - - 3e+0 At5g42325 transcription elongation factor-related C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage