CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g54840

Gene name ARA6

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At3g54840 824649 ARA6 Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome. S.X. H.G.
0.73 85.5 At1g69980 843335 unknown protein F:unknown;P:unknown;C:endomembrane system;P S.X. H.G.
0.57 73.8 At3g29270 822584 ubiquitin-protein ligase F:ubiquitin-protein ligase activity;P:unknown;C:unknown;MPO S.X. H.G.
0.50 65.3 At1g17730 838349 VPS46.1 (VACUOLAR PROTEIN SORTING 46.1) F:unknown;P:vesicle-mediated transport;C:cellular_component unknown;MPFOA S.X. H.G.
0.50 65.3 At3g27090 822327 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMB S.X. H.G.
0.50 65.3 At4g13270 826957 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
39.6 99.8 E-MEXP-1443-raw-cel-1581869573
18.9 99.5 GSM311293 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
17.8 99.5 E-MEXP-1443-raw-cel-1581869515
8.8 99.0 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
8.3 99.0 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
7.9 98.9 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
7.7 98.9 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
7.1 98.8 GSM133736 Buchanan-Wollaston_A-8-bwoll-Ei2_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
6.9 98.7 GSM133957 Fukuda_1-2_0B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
6.8 98.7 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.09 3e-4 46 At5g45130 834549 RHA1 (RAB HOMOLOG 1) small GTP binding protein C.G. S.X.
0.07 5e-3 42 At5g10260 830890 AtRABH1e (Arabidopsis Rab GTPase homolog H1e) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA C.G. S.X.
0.03 5e-3 42 At2g44610 819069 RAB6A Encodes a GTP-binding protein with similarity to yeast YPT6 . RAB6 can complement the yeast YTP mutant. C.G. S.X.
0.03 2e-2 40 At5g03520 831817 ATRAB8C F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA C.G. S.X.
0.06 2e-2 40 At4g19640 827706 ARA7 Encodes Ara7. C.G. S.X.
0.04 7e-2 38 At3g09910 820149 ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B) F:GTP binding, transcription factor binding, ATP binding;P:protein transport, small GTPase mediated signal transduction, regulation of transcription, DNA-dependent;C:endomembrane system, intracellular;MOFPBVA C.G. S.X.
0.04 7e-2 38 At1g16920 838263 ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) small GTP-binding protein (Rab11)similar to YPT3/RAB11 proteins in yeast and mammals, respectively. YPT3/RAB11 is involved in intracellular protein trafficking. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 2e-77 289 Glycine max Gma.1005.1.S1_at CD392954 - - 3e-77 At3g54840 ARA6 C.G. S.X.
0.07 2e-6 52 Hordeum vulgare Contig6921_s_at Contig6921 - - 7e-22 At5g45130 RHA1 (RAB HOMOLOG 1) C.G. S.X.
0.42 1e-32 141 Oryza sativa Os03g0151900 AB032761.1 - Small GTP-binding protein 1e-32 At3g54840 ARA6 C.G. S.X.
0.52 3e-91 335 Populus trichocarpa Ptp.5756.1.S1_a_at CV226248 hypothetical protein - 4e-91 At3g54840 ARA6 C.G. S.X.
0.41 2e-33 143 Triticum aestivum Ta.6859.1.S1_at BJ296670 - - 3e-33 At3g54840 ARA6 C.G. S.X.
0.08 6e-9 59 Vitis vinifera 1609774_s_at CA817625 hypothetical protein LOC100258211 - 2e-34 At5g45130 RHA1 (RAB HOMOLOG 1) C.G. S.X.
0.34 4e-23 107 Zea mays Zm.11785.1.A1_at CF635955 ras-related protein RHN1 - 1e-22 At3g54840 ARA6 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0045022 The directed movement of substances, in membrane-bounded vesicles, from the early sorting endosomes to the late sorting endosomes; transport occurs along microtubules and can be experimentally blocked with microtubule-depolymerizing drugs.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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